Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 643 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 581 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 566 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 428 / 7e-142 Phototropic-responsive NPH3 family protein (.1) AT5G66560 379 / 2e-122 Phototropic-responsive NPH3 family protein (.1) AT5G64330 357 / 2e-113 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT3G50840 349 / 2e-112 Phototropic-responsive NPH3 family protein (.1) AT5G48800 344 / 7e-110 Phototropic-responsive NPH3 family protein (.1) AT1G03010 325 / 2e-102 Phototropic-responsive NPH3 family protein (.1) AT2G47860 319 / 4e-100 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040409 [exp] 1149 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 862 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 851 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 592 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 582 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 567 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 565 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 420 / 1e-138 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 415 / 7e-137 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038600 [exp] 781 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 754 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 673 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 613 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 601 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 433 / 3e-144 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 431 / 3e-143 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 411 / 5e-135 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 406 / 2e-133 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 369 / 6e-119 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10023523 pacid=23160607 polypeptide=Lus10023523 locus=Lus10023523.g ID=Lus10023523.BGIv1.0 annot-version=v1.0 ATGGCGGGCATGAGGCTGGGATCCAATCCCGAGCGCTTCCACCGTGATGGTCATACCTGGTTCTGTTCTACTTCATATGATGGTGATGTGCTTCCAAGTG ATTGCGTGGTTGAAATTGGGGAATCATCATTTCATCTCCACAAGTTTCCACTGCTCACCAGAAGTAAAGTACTAGGAAATCTTATTGCAGCACAATCTAG TACTGAGAATTGTGTTGTGCAACTTGACGATCTACCTGGTGGAACCAACAGTTTTTTGCTGGTGGCCAAATTCTGCTACGGTGTTCAAATCGAGCTCGAT GCATTGAACATAGTCCGTTTGAGATGCGCTGCTGAATATCTCGGCATGACTGAAGAAAAGGGAGAAGGAAATCTCATATACCAAACCGAAAATTTCCTCA ACCAAGTGTTTGGCCACTGGACAGACTCTCTCCAAGCTCTCGAGACGTGCGAAGAGGTTCTCCCCCTCGCGGAAGAGCTACACATCTTTTCGAGATGCAT CCGTTCCCTGGCAATGAAAGCTTGCGGTGAACCGAGTTTGTTCAGCTGGCCGATGTCAGCACGCAGTGCTGACGATAACGTTTGCTGGAATGGAATATGG ACATCATCAGCAGCCAAGCCGAATCATCTGGCATCTGGTGATGATTGGTGGTATGAAGATGTGTCTTTCTTAACGTTACCGCTGTACAAGAGGCTGATTC AGGAAGTGATCTCGAACGGTATGAAGCCCGAAAGGGTTTCCGGAGCGCTTATGAGCTATGCCAGGAGGTACTTGCCGTTACTTGGGAGACAATCAAGCTT CCAGAATGTGAAACAAGATGCACTGGGCTCCACCATCAGAACAACTCCACAGTCCGATCAAAGGAATCTCCTTGAAGAGATAGTTGCGCTTTTGCCTGAT CAGAACGGTATTGCACCAACCAAGTTTTTGCTCCGGCTTTTACGGACCGCGATACTGTTGCACGCTAGCACGTCGTGTCAGGACAATTTGGAGAAGCGGA TCGGATCGCAGTTGGACCAAGCGGCTCTGGAAGATCTTCTGATACCGAATGTGGGCTACTCTGCTGAGACGCTTTATGATATCGACTGCGTTCAGCGGAT GCTTGATCATTTCATGTTTGTGGACCGGGATGATGATGTTCCCACATCGGATGATTATGTGTTGAACGATCAGCAGGGTGCCCGGTCGTTGACGCCGGTG ACGTTGGTGGCTAATCTGATTGATAATTATCTGGCGGAGGTGGCTCCTGATGTCAACTTTAAGCTTGCTAAGTTTCAGTCGCTGGCTGGGCTTATCCCTG ATTATGCACGGCCGATTGACGACGGAATCTATCGCGCAACTGACATATATCTTAAGACACATCCATGGCTGACAGATTCAGAAAGGGAGCTACTATGCAG ACTAATGAACTGCCAGAAGCTGTCACTAGAGGCAAGCACTCACGCAGCACAGAACGAGAGGCTACCGCTTCGCGTGATAGTGCAGGTTCTCTACTTCGAA CAACTTCGGCTCCGCACCTCAGTTGCCGGGTGGTTCTACGTGTCGGAAAACCTCGACGGTAATAACCACCTTGCGCTGGTGAGGAACATCAACGGCGACG AAGGTGCGGATGACGATGGGATACTACTACAAGAACAGAGCAACGTGGAGGCTGAGATGAAGAAGCGAGTGATGGAGCTTGAGAAAGAGTGCATGAGCAT GAAACAGGAGATTGAGAAGCTTATGATAACGAAGAGCAAAGGGAGCTGGAAGGTGCTGCTGAGGAAGTTGGGATTTGGCAGAACCGTGAAACAGAATGGT AGTACTACTACTACTGATGATTGTCATCAACCCAAGAAACCGGAAGCTAGAAAGGATATTAATGGTAAAGAATCGCCGATCCCGAAATCGACAGCACCGT TGGTGATGATGAACGGTGCTGGAGGAGATGGTAATAACGATCATCACGATGATGAATCAGGGAATTAG
AA sequence Show only first row Show all	>Lus10023523 pacid=23160607 polypeptide=Lus10023523 locus=Lus10023523.g ID=Lus10023523.BGIv1.0 annot-version=v1.0 MAGMRLGSNPERFHRDGHTWFCSTSYDGDVLPSDCVVEIGESSFHLHKFPLLTRSKVLGNLIAAQSSTENCVVQLDDLPGGTNSFLLVAKFCYGVQIELD ALNIVRLRCAAEYLGMTEEKGEGNLIYQTENFLNQVFGHWTDSLQALETCEEVLPLAEELHIFSRCIRSLAMKACGEPSLFSWPMSARSADDNVCWNGIW TSSAAKPNHLASGDDWWYEDVSFLTLPLYKRLIQEVISNGMKPERVSGALMSYARRYLPLLGRQSSFQNVKQDALGSTIRTTPQSDQRNLLEEIVALLPD QNGIAPTKFLLRLLRTAILLHASTSCQDNLEKRIGSQLDQAALEDLLIPNVGYSAETLYDIDCVQRMLDHFMFVDRDDDVPTSDDYVLNDQQGARSLTPV TLVANLIDNYLAEVAPDVNFKLAKFQSLAGLIPDYARPIDDGIYRATDIYLKTHPWLTDSERELLCRLMNCQKLSLEASTHAAQNERLPLRVIVQVLYFE QLRLRTSVAGWFYVSENLDGNNHLALVRNINGDEGADDDGILLQEQSNVEAEMKKRVMELEKECMSMKQEIEKLMITKSKGSWKVLLRKLGFGRTVKQNG STTTTDDCHQPKKPEARKDINGKESPIPKSTAPLVMMNGAGGDGNNDHHDDESGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	0	1
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	5.1	0.8664
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	6.0	0.8648
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	10.4	0.8515
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	13.7	0.8588
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10011356 [exp]	15.5	0.8128
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	15.8	0.8558
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025152 [exp]	19.0	0.7968
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	23.1	0.8473
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	25.1	0.8194
AT4G19420			Pectinacetylesterase family pr...		Lus10033304 [exp]	26.4	0.8459

Compare expression of checked genes

Lus10023523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.