Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01720 617 / 0 Ribophorin I (.1) AT1G76400 446 / 5e-152 Ribophorin I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040410 [exp] 822 / 0 AT2G01720 645 / 0.0 Ribophorin I (.1) Lus10025159 [exp] 462 / 5e-158 AT1G76400 843 / 0.0 Ribophorin I (.1) Lus10016038 [exp] 305 / 3e-98 AT1G76400 595 / 0.0 Ribophorin I (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223500 [exp] 684 / 0 AT2G01720 683 / 0.0 Ribophorin I (.1) Potri.008G038700 [exp] 677 / 0 AT2G01720 677 / 0.0 Ribophorin I (.1) Potri.005G255000 [exp] 455 / 2e-155 AT1G76400 816 / 0.0 Ribophorin I (.1) Potri.002G006600 [exp] 452 / 2e-154 AT1G76400 817 / 0.0 Ribophorin I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04597 [flax] [poplar] Ribophorin_I Ribophorin I
Representative CDS sequence Show only first row Show all	>Lus10023524 pacid=23160525 polypeptide=Lus10023524 locus=Lus10023524.g ID=Lus10023524.BGIv1.0 annot-version=v1.0 ATGGATGCTTCACCGAGATCGCCGCCACGAACTTCCGCCTTCTTGATCTGCGCATTTCTCTCGCTTCTCGCTGTCTCATCCTCCGCCGTGCAGGAGATCC AAATTCTCAACGCCGAACGTCGAATTGACTTGAGTTCACAGATTGCTGTGGTATTCTTGACTCTAAAGGTCGAAAATACAGGAAGTGCAGCTGCTTCTGA AATCCTTCTTGCATTCTCTCCCACTGAATTCGATCACCTGGCAGAGGTCAAGGCAAAAGTGGCTAGCGGAAAGAAAAGGAAGAAAACATACGTACAGCTT GATGTTAATCCAACAGAGGTACCTGATGCACCGAGTGGAACTAAGTATTACAAAGTGTCGCTAGTTAATCCTCTAAGCCCTGGTGATACAACCACCCTTG AAATTCTATATATGTTGACACATTCCATGGAACCTTTCCCTGCGGAGATTAGTCAATCAGAGCCGCAGCTGGTGTACTATCGTGACAGTGCACTTATACT GTCACCGTATCATATTAAGAAGCAGGCAACTTTTGTCAAAACACCGAGCACAAATGTTGTATCATATACTAGAGTGGAGCCGACTAACAAAGCTGGTATA GAGCTAAGGTATGGACCATATCAAGATCGTCCTGCATACTCGTTCACTCCAGTATTGGTTCATTTTGAGAACAACAGCCCGTTTGCCGTTGTTGAGGAGC TTGTACGTGAAGTTGAAATCTCACATTGGGGAAACATTCAGATTACGGAGCAATATACATTAGCTCATGGTGGTGCTAAACTTAAAGGAATTTTTTCTAG GGTTGACTATCAATCCAGGCAATCTACTGGCGGTGTATCTTCATTCAAAAACTTTCTAGCAAGACTGCCTCCTAGGGTGCACTCTGTATACTATCGAGAT CAAATTGGGAACATTTCCTCTTCTCGTCTGCGTACAGATTCTCGCAAGTCGGAACTTGAAATTGAACCACGGTATCCCCTTTTTGGAGGGTGGAAATCCA CCTTCATAATTGGATATGGCCTTCCGTTGGAAGATTTCCTCTTCGAAGCTGCTAATGGCACAAGATATCTCAACTTTACCTTTGGCTGCCCTCTGTCTGG GACCGTTGTAGACAAGTTGATTGTGAAGGTTGTGTTGCCAGAAGGATCTAAAGATCCTTCAGCTGTAGTTCCCTTTTCAGTAGACCAACATCTAGAGACT AAGTACTCATATCTTGATGTTGTCGGAAGGCCTGTTGTGGTTATAGAGAAGAAGAATGTAGTCCCTGAGCACAATACCCCTTTTCAGGTGTATTATACGT TTAACCCAGTGTTCATGCTAGCAGAGCCATTGATGTTGGTGTCAGTTGTTTTCTTCCTTTTCGTGACATGTGTGGCTTACCTGCATATGGATCTTTCAAT ACGCAAAGGATAG
AA sequence Show only first row Show all	>Lus10023524 pacid=23160525 polypeptide=Lus10023524 locus=Lus10023524.g ID=Lus10023524.BGIv1.0 annot-version=v1.0 MDASPRSPPRTSAFLICAFLSLLAVSSSAVQEIQILNAERRIDLSSQIAVVFLTLKVENTGSAAASEILLAFSPTEFDHLAEVKAKVASGKKRKKTYVQL DVNPTEVPDAPSGTKYYKVSLVNPLSPGDTTTLEILYMLTHSMEPFPAEISQSEPQLVYYRDSALILSPYHIKKQATFVKTPSTNVVSYTRVEPTNKAGI ELRYGPYQDRPAYSFTPVLVHFENNSPFAVVEELVREVEISHWGNIQITEQYTLAHGGAKLKGIFSRVDYQSRQSTGGVSSFKNFLARLPPRVHSVYYRD QIGNISSSRLRTDSRKSELEIEPRYPLFGGWKSTFIIGYGLPLEDFLFEAANGTRYLNFTFGCPLSGTVVDKLIVKVVLPEGSKDPSAVVPFSVDQHLET KYSYLDVVGRPVVVIEKKNVVPEHNTPFQVYYTFNPVFMLAEPLMLVSVVFFLFVTCVAYLHMDLSIRKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01720			Ribophorin I (.1)		Lus10023524 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	4.7	0.9017
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	10.4	0.8985
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	13.1	0.9009
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	13.4	0.8668
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	19.4	0.8469
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	22.4	0.8880
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	23.1	0.8828
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	23.2	0.8683
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	26.3	0.8746
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	29.2	0.8774

Compare expression of checked genes

Lus10023524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.