Plant FIBer expression Database

Lus10023525 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54740 38 / 0.0006 SESA5 seed storage albumin 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040411
[exp]
152 / 7e-48 AT5G54740 59 / 3e-11 seed storage albumin 5 (.1)
Lus10040395
[exp]
49 / 6e-08 AT4G27170 60 / 1e-11 seed storage albumin 4 (.1)
Lus10040396
[exp]
49 / 8e-08 AT5G54740 62 / 2e-12 seed storage albumin 5 (.1)
Lus10023513
[exp]
43 / 1e-05 AT5G54740 60 / 1e-11 seed storage albumin 5 (.1)
Lus10040397
[exp]
41 / 4e-05 ND 39 / 5e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G134600
[exp]
47 / 1e-07 AT5G54740 56 / 2e-10 seed storage albumin 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0482 Prolamin PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence
>Lus10023525 pacid=23160510 polypeptide=Lus10023525 locus=Lus10023525.g ID=Lus10023525.BGIv1.0 annot-version=v1.0
ATGGCGAAGCTTACAGCAGCACTCGCATTCCTCCTCCTGGCAGCAGTGGCGTCCGAGGCATCATCCTCCGTACGAACCACAGTGATCATCGACCAGGCTG
AGAACGAGGCCGGCCGCGGGACCAGGGGATGGTCCACGTGGGGGCAACAAGACCCGCAGGGGGATTTCAACATGTGCTGCAACCAGCTGAGGCAGATGGA
CGAGGAGTGCGCTTGCATGGGTATAGAGAGGGCCGTGGAGACCCTATTGCAGCAGAAGCAGCGAGGTTTCCTGAGCACGGGTACTCTAGACGTGCAGTCG
GCTCAGCAGCTCGCAGAGACTCTCCCCGGGAAGTGTATGAGTAGCCCTGCGAGGTGCAGTATCAGCATCCGCTCCACTTCGTTCTGA
AA sequence
>Lus10023525 pacid=23160510 polypeptide=Lus10023525 locus=Lus10023525.g ID=Lus10023525.BGIv1.0 annot-version=v1.0
MAKLTAALAFLLLAAVASEASSSVRTTVIIDQAENEAGRGTRGWSTWGQQDPQGDFNMCCNQLRQMDEECACMGIERAVETLLQQKQRGFLSTGTLDVQS
AQQLAETLPGKCMSSPARCSISIRSTSF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54740 SESA5 seed storage albumin 5 (.1) Lus10023525
[exp]
0 1
AT4G12300 CYP706A4 "cytochrome P450, family 706, ... Lus10024577
[exp]
2.4 0.8524
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Lus10031529
[exp]
3.0 0.8609
AT1G72100 late embryogenesis abundant do... Lus10041750
[exp]
3.7 0.8068
AT5G50790 SWEET10, AtSWEE... Nodulin MtN3 family protein (.... Lus10016742
[exp]
7.1 0.8539
AT1G68390 Core-2/I-branching beta-1,6-N-... Lus10035145
[exp]
7.3 0.8238
AT3G19660 unknown protein Lus10033765
[exp]
8.7 0.8304
AT5G49600 Protein of unknown function, D... Lus10037804
[exp]
13.4 0.8061
AT4G16160 ATOEP16-2, ATOE... Mitochondrial import inner mem... Lus10037743
[exp]
15.0 0.7226
AT1G23110 unknown protein Lus10007928
[exp]
17.3 0.7884
AT5G66780 unknown protein Lus10041741
[exp]
17.5 0.7615

Lus10023525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.