Plant FIBer expression Database

Lus10023526 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14145 195 / 2e-65 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040412
[exp]
244 / 7e-85 AT4G14145 189 / 4e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G223700
[exp]
176 / 9e-58 AT4G14145 168 / 6e-55 unknown protein
Potri.008G038500
[exp]
81 / 9e-21 AT4G14145 80 / 8e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10023526 pacid=23160512 polypeptide=Lus10023526 locus=Lus10023526.g ID=Lus10023526.BGIv1.0 annot-version=v1.0
ATGACAACGATAGAGACGGGCGCCGGTCGCCCTCGGAAGACGCCGGACGGCGGCGTCGTTCCTACTCCCGCCGCCGCTGCTGCTGCTGCAACCAGTAAGG
TTGAGCAGAGCAAAATCGGGTCGTTCAAAAGATGGGGGAGGAGGTATCCGTTTGTCAGATATGGACTCCCCATGATTTCCCTCACTGTGATCGGTGCTCT
TGGCCTTGGTCATCTCTTGCAAGGCAGCAAAGACATTGCTAAAGTAAAAGACGATCAAGAATGGGAGATCATTGAGACTAGGAAGGCACTGTCAAGAACG
GGGCCTGTCAATGCTTATAAACCCAAAAATATTTCAATGGAAGAGGAGCTACAGGCTCTGCAGCAGAAAGTGAACATAGACAACTACGAGTACAAGAAAA
TTCCAAAGCCAAACGAAAGCAGATGA
AA sequence
>Lus10023526 pacid=23160512 polypeptide=Lus10023526 locus=Lus10023526.g ID=Lus10023526.BGIv1.0 annot-version=v1.0
MTTIETGAGRPRKTPDGGVVPTPAAAAAAATSKVEQSKIGSFKRWGRRYPFVRYGLPMISLTVIGALGLGHLLQGSKDIAKVKDDQEWEIIETRKALSRT
GPVNAYKPKNISMEEELQALQQKVNIDNYEYKKIPKPNESR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14145 unknown protein Lus10023526
[exp]
0 1
AT5G05310 TLC ATP/ADP transporter (.1.2.... Lus10030543
[exp]
1.0 0.8813
AT1G13810 Restriction endonuclease, type... Lus10010434
[exp]
10.9 0.7501
AT5G63220 unknown protein Lus10023490
[exp]
12.0 0.7913
AT1G17330 Metal-dependent phosphohydrola... Lus10040985
[exp]
18.9 0.8290
AT3G02710 ARM repeat superfamily protein... Lus10026721
[exp]
20.0 0.8187
AT5G19410 ABCG23 ATP-binding cassette G23, ABC-... Lus10033637
[exp]
21.7 0.7944
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Lus10006383
[exp]
22.8 0.8095
AT3G62140 unknown protein Lus10038035
[exp]
24.5 0.8271
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Lus10042533
[exp]
25.9 0.7913
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Lus10042047
[exp]
29.7 0.7814

Lus10023526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.