Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38970 853 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 790 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 728 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 582 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 225 / 1e-63 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 181 / 3e-48 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 167 / 2e-43 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 135 / 8e-33 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT2G44581 46 / 9e-06 RING/U-box superfamily protein (.1) AT2G04240 46 / 2e-05 XERICO RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040413 [exp] 1261 / 0 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 662 / 0 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 653 / 0 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 647 / 0 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 178 / 2e-50 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 176 / 1e-46 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 153 / 4e-41 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 131 / 5e-35 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 139 / 4e-34 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038450 [exp] 1071 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 1033 / 0 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 784 / 0 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 491 / 3e-165 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 489 / 1e-164 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 206 / 1e-56 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 161 / 3e-42 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 153 / 2e-39 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.001G166800 [exp] 48 / 3e-05 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.007G086300 [exp] 44 / 7e-05 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023527 pacid=23160581 polypeptide=Lus10023527 locus=Lus10023527.g ID=Lus10023527.BGIv1.0 annot-version=v1.0 ATGGGGAGTAAGTGGAGGAAAGTGAAGCTGGCTTTGGGTATGAATCTTTGTGTGTATGTGCCAAGAACACTTGATGGAGGTGAATCCCCTCCAGCACCAA CTGAGAGAGTTTCAGATGTTGCTCTCCTCCCCCCTGCCGGTTGGGAGGATGTTAGGCCAATGACTCCCACACCTTCTTCTCATGGTTTGAAGCTTCTCAG AAGTGGAAGCAAAGCCTCTAAGCATGCCTGCTCAATATGCCTGACCAAAATGAAAGAAGGAGGCGGTCAAGCTCTATTCACGGCTGAGTGCTCACATTCG TTCCATTTCCATTGCATTGCTTCCAATGTGAAGCACGGAAACCAAATCTGTCCAGTCTGCAGGGCAAAATGGAAAGAGATCCCTTTGCAGGCTCCAAACC TAGACCCTCCACCCGGGAGAGCCTCTGTCAATGCTGTAGGGTGGCCTCACAACGATGCTTTGATGAACGTGGTACGCCGATTACCTCCACCTCGTCGCGA CCCAAGTAGGAGGCACATTGTACCTCTACTTCAGGCTGTTGAACCTAGTGTATTCGATGACGACGAGACTCTAGATATCCAGCCAAGATTCCCTGGCAGT AGTTGTTCTGGTACATCAATCGACATCAAGGTATACCCTGAAGTTACAGCAGCATCACATTCAAGCTCTTATGAGAACTTCACTGTTCTTGTCAATCTCA AAGCTGCTGCCACAATTATGAGACAAAATCAGCCTCAACTTTCTCGGAGTCCTCGTGCTCCGGTTGACCTAGTCACCGTTCTCGACACCAGTGGTAGCAT GGCGGGAACGAAATTGGCATTGCTTAAGAGAGCTATGGGGTTTGTGATACAGAACCTTGGTTCTAACGATCGGCTCTCGGTTATTGCCTTCTCATCAACA GCTCGGCGCCTCTTTCCACTGAGAAGAATGTCTGATGCTGGAAGGCAGCAAGCACTTCAAGCTGTGAACTCTTTGCTTGCAAATGGTGGGACCAATATAG CTGAAGGTCTGAGGAAAGGTGCTAAGGTGATGGAAGAGAGGAAGGAAAAGAATCCTGTTGCTAGCATAATATTGCTTTCCGATGGTCAGGATACTTACAC TGTTAGTGGTGGTGGTGGAAACCAGTCTCAACCGGATTACCGGTTGCTCCTACCTCTCTCGATCGATGGTGGCGAGGCTGCTGCTTTCCAGATTCCCGTG CATTCATTCGGCTTTGGAGCGGACCATGATGCTTCATCAATGCATTCGATTTCAGAAATCTCGGGGGGAACCTTTTCATTCATCGAGACAGAAGCCATCA TCCAGGATGCATTTGCACAGTGTATCGGAGGGCTTTTGAGTGTTGTGGTACAGGAGTTGCAGGTGGAAGTTGAATGTGTGAATCCCAACATAAAGCTTGG ATCTTTGAAAGCCGGAAGCTATCAAAGTTGTGTTTCTGCTGATCGATGCACGGGTTATATCGATGTCGGAGATTTGTATGCAGATGAAGAAAGGAATTTT CTCGTGTCTCTCAATGTTCCAGAAGAGCAGGCCTCAAATGGTCAAACCTCATTGCTTAAAGTTAAATGCTTTTACAAGGATCCATTCACCAAAGAGATGG CCACTTTGGAAAGTCAAGAAGTTATGCTTCAGAGAGGTGAAGTAGCTGCTGGGAAGGAAGCGGTATCGATTGAAGTCGACAGGCAGCGGAACAGGTTGAA GGCTGCCGAGGCAATGTCACAAGCGAGAACTGCAGCGGAGCAAGGAGACCTAACCAGGGCAGGTTCCATCCTCGAGAATTGTCGTAAAGAGCTGTCGAAA ACCATGTCAGCTAAATCAAAGGACCGGTTATGTGTTGCGCTGGACGCAGAGCTAAAGGAAATGCAGGATCGGATGACAAGTAGGAACGTATACGAGTCTT CTGGGAGAGCATATATACTATCGGGTTTGAGCTCGCATTCGTGGCAAAGAGCTACAGCAAGAGGGGACTCCACCACAGGCGGTTCGAGCCTTGTTCACTC TTATCAGACCCCTTCGATGACTGAGATGCTCACTCGGTCTCAGACAACGTTCGTGGGGAGTCCATCTGCCGGCCAGAGACTTATCCAGCCGTTGCTGTCG TTTGGTTCCCAACCAAAGCCAAGGTGA
AA sequence Show only first row Show all	>Lus10023527 pacid=23160581 polypeptide=Lus10023527 locus=Lus10023527.g ID=Lus10023527.BGIv1.0 annot-version=v1.0 MGSKWRKVKLALGMNLCVYVPRTLDGGESPPAPTERVSDVALLPPAGWEDVRPMTPTPSSHGLKLLRSGSKASKHACSICLTKMKEGGGQALFTAECSHS FHFHCIASNVKHGNQICPVCRAKWKEIPLQAPNLDPPPGRASVNAVGWPHNDALMNVVRRLPPPRRDPSRRHIVPLLQAVEPSVFDDDETLDIQPRFPGS SCSGTSIDIKVYPEVTAASHSSSYENFTVLVNLKAAATIMRQNQPQLSRSPRAPVDLVTVLDTSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSST ARRLFPLRRMSDAGRQQALQAVNSLLANGGTNIAEGLRKGAKVMEERKEKNPVASIILLSDGQDTYTVSGGGGNQSQPDYRLLLPLSIDGGEAAAFQIPV HSFGFGADHDASSMHSISEISGGTFSFIETEAIIQDAFAQCIGGLLSVVVQELQVEVECVNPNIKLGSLKAGSYQSCVSADRCTGYIDVGDLYADEERNF LVSLNVPEEQASNGQTSLLKVKCFYKDPFTKEMATLESQEVMLQRGEVAAGKEAVSIEVDRQRNRLKAAEAMSQARTAAEQGDLTRAGSILENCRKELSK TMSAKSKDRLCVALDAELKEMQDRMTSRNVYESSGRAYILSGLSSHSWQRATARGDSTTGGSSLVHSYQTPSMTEMLTRSQTTFVGSPSAGQRLIQPLLS FGSQPKPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	0	1
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10008275 [exp]	1.7	0.8624
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	1.7	0.8422
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	2.4	0.8424
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	2.8	0.8374
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	3.5	0.8211
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	8.4	0.8285
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	9.8	0.8145
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10033242 [exp]	13.2	0.8172
AT3G05545			RING/U-box superfamily protein...		Lus10031491 [exp]	15.2	0.7853
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	18.5	0.7880

Compare expression of checked genes

Lus10023527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.