Plant FIBer expression Database

Lus10023528 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38300 41 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033566
[exp]
153 / 4e-46 AT5G38300 125 / 3e-35 unknown protein
Lus10017608
[exp]
145 / 4e-43 AT5G38300 124 / 1e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G116100
[exp]
57 / 1e-09 AT5G38300 120 / 8e-33 unknown protein
PFAM info
Representative CDS sequence
>Lus10023528 pacid=23160648 polypeptide=Lus10023528 locus=Lus10023528.g ID=Lus10023528.BGIv1.0 annot-version=v1.0
ATGTCGGCGATTTTTCAGAACCAGACGTTCTTCAACGTTCTCGATCCATTGTCTCTGATTCTCTCACACAACTCCTCTGATTCTCCTGATCCCAGCCCTC
TCAAGCTCACCACCAAGCTTACCATCGGGAATCCAAGCTCCGTACGAGGACGAGAACGCCGCACCAGTCTTTGGGCACCCCGCCCCCCGCGCGGGAACAA
AACCGCCCCACCTGTCTTTCCCCGACGAGACAGAGTCGCGGAGGAGGGAGACTCCGCCTCCTCTTCCGGCGGCGTAGAAGCAGGGTACGGGGTGGCTCAG
TCGGTGCCGAATTTCTCAGCAACGTTGAGGAAGGAGAACAGGAAGCCTCCTTCTCCCGTGGGGTATCTGACGCCTCCTCCGTGCAAGAGCGGGTCGAAAT
TACAGGGCGTGCTTTCTTCTTCTTCCAGAGGGAGTAAGTCGGTTGGTTCAGTTGAGAAGAGAAGACCGATTGGCAACGTCGGAGGAGTCATGGCGACGAG
GATGATCTATGCCAATGTGGAGGAATTGAAGGGATTGTCGACGGTGAATGGGGAAAGCAGAAGAGTGATTAGTGGACGGGGAATCGGTGGGGAGACGACC
GTTCTTGGACCTCTAACGGGACGTGGTAACACTAATCTACGTGGCATCCTACCTGGCCTCCATTCTTTTATCCACCATCCGCTAAAATCAACGACTTTTC
GTTAG
AA sequence
>Lus10023528 pacid=23160648 polypeptide=Lus10023528 locus=Lus10023528.g ID=Lus10023528.BGIv1.0 annot-version=v1.0
MSAIFQNQTFFNVLDPLSLILSHNSSDSPDPSPLKLTTKLTIGNPSSVRGRERRTSLWAPRPPRGNKTAPPVFPRRDRVAEEGDSASSSGGVEAGYGVAQ
SVPNFSATLRKENRKPPSPVGYLTPPPCKSGSKLQGVLSSSSRGSKSVGSVEKRRPIGNVGGVMATRMIYANVEELKGLSTVNGESRRVISGRGIGGETT
VLGPLTGRGNTNLRGILPGLHSFIHHPLKSTTFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38300 unknown protein Lus10023528
[exp]
0 1
AT3G20810 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II... Lus10031247
[exp]
10.8 0.6772
AT2G01913 unknown protein Lus10031943
[exp]
11.9 0.6865
AT3G20810 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II... Lus10031818
[exp]
19.7 0.6556
Lus10005752
[exp]
25.1 0.6457
AT3G28455 CLE25 CLAVATA3/ESR-RELATED 25 (.1) Lus10039460
[exp]
29.7 0.6692
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Lus10031770
[exp]
37.1 0.6501
AT1G31880 BRX, NIP3;1, NL... BREVIS RADIX, DZC (Disease res... Lus10030349
[exp]
39.0 0.6548
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10015720
[exp]
39.6 0.6379
AT1G20650 ASG5 ALTERED SEED GERMINATION 5, Pr... Lus10016021
[exp]
41.6 0.6447
AT3G15680 Ran BP2/NZF zinc finger-like s... Lus10002032
[exp]
45.8 0.6545

Lus10023528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.