Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04220 498 / 4e-173 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 446 / 4e-153 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 443 / 1e-151 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G05500 168 / 7e-46 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G21010 157 / 9e-45 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 149 / 2e-39 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G11100 120 / 5e-29 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G21040 87 / 6e-19 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 80 / 1e-15 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 79 / 2e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040414 [exp] 894 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 692 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 593 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 471 / 1e-162 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10017268 [exp] 465 / 3e-160 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 454 / 1e-155 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 451 / 1e-154 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 445 / 3e-152 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 418 / 5e-142 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038300 [exp] 597 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 596 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 490 / 5e-170 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 483 / 2e-167 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 470 / 2e-162 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 456 / 6e-157 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 174 / 3e-48 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 173 / 8e-48 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 155 / 4e-41 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 138 / 2e-35 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10023529 pacid=23160524 polypeptide=Lus10023529 locus=Lus10023529.g ID=Lus10023529.BGIv1.0 annot-version=v1.0 ATGGGTTTTTTCAGCACTGTATTGGGAATCGTTGGGTTTGGCATTGGATTGGCCGTTGGATTGGCTGCTGGGTTCTATCTCTTTGTTTACTCCAAGCCTA AACATGTCAAGGAACCAGGGGTTAGGCCACTTGGGGAGCTGGAATCTGAGACCTTGCTCAACATTCTGCATGAGATTCCATTGTGGGTGAAATCTCCCGA CTATGAACGAGTGGATTGGTTCAACAAGTTTGTTTTGGCAATGTGGCCATATCTCGATAAAGCCATATGTGCTTCAATTAAAACCACGAGTGAACCGATC TTCACAGAGTACATTGGGAAGTATGGCATCGAAGCTATCGAGTTTGAGCATCTCAGTCTTGGAACTCTTCCTCCCACTGTTCATGGTCTTAAAGTGTTGG ACACCAATGAGAATGCTATAGTGCTGGAACCAGCAGTTAGGTGGGCAGGGAATCCCAACATAACTTTGGTGTTAAAGTTGATGTCTTTACCAATTACTGT TCAGTTGGTTGATTTGCAAGTATTGGCAGCACCAAGGATATCATTGAAGCCTCTTGCTCCTGCCTTCCCATGTTTTGCCAACATTGTGGTGTCTTTACTA GATAGACCTCGGGTGGACTTCGGGCTTGAAATTTCTGGAGGTGATATCATGTCCATACCTGGTCTTCGTGGATTTGTTCAGAAAACGATCGAAAAGCAGA TAGCAAGTATGTACATTTGGCCTCGGATTCTCCAAATACCAGTCCTTGATCCTTCAACAGGTCCACCAAGCCCTTGTGCATATGAAACTGTTATATTGTG GGATGACAGTATTCGATCCGATGACCTCTTAGTTGGTGCCCATGACCCATTGGGAATGCAAGCCGTGCCCTTGAAGACAATGACACCCCAGGAGCCAAAA CATCTCACTCTCGACTTGCTCAAGAGCACCGAGGCTTGTGATCCTCGCGACAGAAAACAAAGAGGGCAGCTTGTGATTGAGCTGACCCTTGTGCCTTTCA AAGAAGACAGTTCACTCAGTATCCTAGATGGACACAGCAGTAAAGGATCAAGTGGGAAGGAAAACCAGCCTTATGACGATTCACTTAATGGACCGAGTTT ACTTTCGATACGAGTACAATCTGCAGAGGATGTAGAAGGACACAACCACAACAATCCCTATGCTAGGGTCCTCTTCAGAGGAGAAAGGAAGAAAACTAAG ATGATTAGGAAAGCTCGTAATCCACGTTGGAACGAGGAGTTTCAGTTCATGATGGACCATCCTCCGCTGCGAGAGAAGATCCGGGTCGAGGTCCTGAGCA AAAGAACAGCCTTCAGCTTCAGATCAAGGGAATCAATGGGGTACGTGGAAGTGAATCTGGATGATGTTGTGTATAATGGAAGGATTAATGAGAAGTACCA TCTCATCAATTCAAAGAGTGGAGTGATTCATGTTGAGATACGGTGGGACAGAGTGTAA
AA sequence Show only first row Show all	>Lus10023529 pacid=23160524 polypeptide=Lus10023529 locus=Lus10023529.g ID=Lus10023529.BGIv1.0 annot-version=v1.0 MGFFSTVLGIVGFGIGLAVGLAAGFYLFVYSKPKHVKEPGVRPLGELESETLLNILHEIPLWVKSPDYERVDWFNKFVLAMWPYLDKAICASIKTTSEPI FTEYIGKYGIEAIEFEHLSLGTLPPTVHGLKVLDTNENAIVLEPAVRWAGNPNITLVLKLMSLPITVQLVDLQVLAAPRISLKPLAPAFPCFANIVVSLL DRPRVDFGLEISGGDIMSIPGLRGFVQKTIEKQIASMYIWPRILQIPVLDPSTGPPSPCAYETVILWDDSIRSDDLLVGAHDPLGMQAVPLKTMTPQEPK HLTLDLLKSTEACDPRDRKQRGQLVIELTLVPFKEDSSLSILDGHSSKGSSGKENQPYDDSLNGPSLLSIRVQSAEDVEGHNHNNPYARVLFRGERKKTK MIRKARNPRWNEEFQFMMDHPPLREKIRVEVLSKRTAFSFRSRESMGYVEVNLDDVVYNGRINEKYHLINSKSGVIHVEIRWDRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	0	1
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	7.3	0.8260
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	7.5	0.8202
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	9.6	0.8227
AT3G46450			SEC14 cytosolic factor family ...		Lus10016575 [exp]	14.5	0.6573
AT4G21970			Protein of unknown function, D...		Lus10040067 [exp]	17.7	0.7736
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	17.7	0.8093
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	20.8	0.7870
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	24.4	0.8003
AT3G13690			Protein kinase protein with ad...		Lus10030950 [exp]	25.5	0.7763
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	27.0	0.8121

Compare expression of checked genes

Lus10023529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.