Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68090 331 / 1e-113 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT5G65020 219 / 2e-69 ANNAT2 annexin 2 (.1.2) AT5G10230 209 / 9e-66 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 207 / 4e-65 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G12380 199 / 8e-62 ANNAT8 annexin 8 (.1) AT1G35720 187 / 2e-57 ATOXY5, ANNAT1 annexin 1 (.1) AT2G38760 166 / 6e-49 ANN3, ANNAT3 annexin 3 (.1) AT2G38750 107 / 1e-26 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040415 [exp] 546 / 0 AT1G68090 306 / 2e-104 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10009225 [exp] 522 / 0 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10037992 [exp] 476 / 5e-171 AT1G68090 321 / 6e-110 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10031942 [exp] 307 / 6e-104 AT1G68090 353 / 2e-122 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10035101 [exp] 305 / 3e-103 AT1G68090 352 / 1e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10024054 [exp] 199 / 1e-61 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10008227 [exp] 198 / 2e-61 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 198 / 2e-61 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041696 [exp] 192 / 7e-59 AT5G65020 395 / 2e-138 annexin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041900 [exp] 467 / 4e-167 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 459 / 4e-164 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 314 / 9e-107 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.010G101800 [exp] 291 / 4e-97 AT1G68090 343 / 3e-117 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.007G092500 [exp] 209 / 2e-65 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.002G095600 [exp] 203 / 2e-63 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.005G075900 [exp] 199 / 7e-62 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G024800 [exp] 195 / 4e-60 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.003G200700 [exp] 188 / 1e-57 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 167 / 2e-49 AT5G12380 442 / 3e-157 annexin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10023530 pacid=23160490 polypeptide=Lus10023530 locus=Lus10023530.g ID=Lus10023530.BGIv1.0 annot-version=v1.0 ATGTCAACTCTGAATTTCCCGCCGGTGCTTCCTTCTCCCAGAGACGACGCCATTCTTCTCCACAAGGCTTTCAAGGGATTCGGATGCGATAACTCAGCAG TTGTAGATATTCTGGCTCATCGAGATGCAGCACACCGTGCTTATATCCAATATGAGTATAGGACAATGTTCTCCGAGGACATCTTCAAGCGCTTGTCTTC CGAGCTTAGTGGCAAGCTCAAGAATGCAGTTATGATGTGGATGCAAGATCCTCCAGGATGTGATGCTGCGATTGTCAGGCAAGGGTTAATGTCCGAATCG ACTAATTTGGATGCTGTAACTGAAGTAATCTGTTCCCGAACCCCATCCCAGATACGGATCTTCAAACAGCATTACTACGCGAGATTTGGCGTTTACCTCG AGCATGATGTCGAATCTCGTACTTCCGGAGATCATAAAAGGATGTTGCTTGCATATGCAAGCACTCCACGTTACGAAGGCTGGGAAGTCGACAAAGTGGC AGCCGAGAACGATGCAAAAACTCTATACAAAGCAGGGGAGAAGAGGTTGGGAACTGACGAGAAGACGTTCATTAACGTTTTCAGCTCACGCAGCTCGGCT CATTTGGCTGCTGTCGATGCTGCTTACGACAACTTATACGGACACTCCTTGAAGAAGGCTGTGAAGAAGGAAACATCAGGATATTTCAAGCAAGCACTTT TGACAGTTCTGCTATGCTCCGAGAATCCTGCAAAGTACTTCGCAAAGGTGCTGCACAAGGCGATGAAGGGTCTGGGCACGAACGATGCGGCACTTATACG AGTAATTGTGACAAGGACTGAGATTGACATGCAATATATAAAAGCCGAGTATGTGAAGAAGTACAAGAAGAAGTTGAACGATGCAGTTCATTCGGAAACA TCGGGGAGTTACAGGAAGTTCCTGATTGCCCTTATAGGACCTGCTATTTGA
AA sequence Show only first row Show all	>Lus10023530 pacid=23160490 polypeptide=Lus10023530 locus=Lus10023530.g ID=Lus10023530.BGIv1.0 annot-version=v1.0 MSTLNFPPVLPSPRDDAILLHKAFKGFGCDNSAVVDILAHRDAAHRAYIQYEYRTMFSEDIFKRLSSELSGKLKNAVMMWMQDPPGCDAAIVRQGLMSES TNLDAVTEVICSRTPSQIRIFKQHYYARFGVYLEHDVESRTSGDHKRMLLAYASTPRYEGWEVDKVAAENDAKTLYKAGEKRLGTDEKTFINVFSSRSSA HLAAVDAAYDNLYGHSLKKAVKKETSGYFKQALLTVLLCSENPAKYFAKVLHKAMKGLGTNDAALIRVIVTRTEIDMQYIKAEYVKKYKKKLNDAVHSET SGSYRKFLIALIGPAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	0	1
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	5.5	0.8674
AT2G24060			Translation initiation factor ...		Lus10036595 [exp]	5.5	0.8475
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	6.3	0.8277
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	10.4	0.8551
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	10.8	0.7903
AT4G04750			Major facilitator superfamily ...		Lus10029965 [exp]	11.7	0.8309
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	14.7	0.8185
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	15.1	0.8021
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	15.5	0.8520
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	18.5	0.8311

Compare expression of checked genes

Lus10023530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.