Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1199 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1192 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1168 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1051 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040416 [exp] 1412 / 0 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10026518 [exp] 1210 / 0 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 1206 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 158 / 1e-40 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 124 / 6e-34 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224100 [exp] 1257 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.008G038200 [exp] 1255 / 0 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224200 [exp] 1244 / 0 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1) Potri.006G126800 [exp] 1228 / 0 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1) Potri.016G091100 [exp] 1217 / 0 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [flax] [poplar] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Lus10023531 pacid=23160576 polypeptide=Lus10023531 locus=Lus10023531.g ID=Lus10023531.BGIv1.0 annot-version=v1.0 ATGGAGCTCTGCAGCAACAACGAGAACAACAACAATGGCGGTGGGTTTTCCCTCGCTGATCCGTTGAACTGGGGAATGGCCGCAGAGTCAATGAAAGGGA GCCACTTGGAGGAGGTGAAGCGTATGGTTGCAGAGTCGAGATCCCCTGTCGTGAAGCTTGCCGGGCAGACTCTGTCCATTGCCCAAGTCGTCGCAATTTC CCGCTCTGACGCGGCTGCCGAGCTGGACGAGGAGGCCCGGCCGAGGGTGAAGGCCAGCAGCGACTGGGTCATGGAGAGCATGAACAAAGGCACGGACAGT TACGGTGTCACGACTGGGTTCGGAGCCACGTCTCATCGTAGGACTAAGCAGGGTGGAGCCCTTCAGAGGGAGCTGATCAGGTTCTTGAACGCTGGCATAT TCGGCAACGGTACGGAGTCAACCCACACGCTGCCATACTCCGCAACCAGGGCAGCCATGCTGGTCAGGATCAACACCTTGCTCCAGGGCTATTCAGGAAT CCGGTTCGAAATTCTCGAAGCCATCACCAAGCTCCTCAATAACAATGTCACCCCATGTCTACCTCTCAGGGGCACCATCACCGCCTCTGGTGACTTGGTC CCTCTATCCTACATTGCAGGCCTCTTAACCGGCCGCCCCAACTCCAAAGCAGTCGGCCCCAAAGGCGAGTCCCTGAACGCGACACAAGCCTTTGAAGCTG CTGGGATCACCGGTGGATTCTTCGAGTTGCAGCCAAAGGAAGGTCTGGCAATGGTGAACGGTACTGCAGTTGGTTCGGGCATGGCCTCGATGGTCCTTTT CGACGCCAACATTTTGGCGGTGATGTCCGAGGTTTTGTCAGCGATTTTCGCTGAAGTCATGCAAGGGAAACCCGAGTTCACAGACCACTTGACGCATAAG CTGAAGCATCATCCGGGCCAGATTGAAGCTGCAGCAATCATGGAACATATCCTGAAGGGCAGCTCTTACGTCAAGGAAGCTGAGAAATTGCACGAAATTG ATCCGTTACAGAAGCCGAAACAGGACAGGTACGCTCTCAGGACATCTCCTCAATGGCTCGGCCCCCTGATCGAAGTGATCAGGTCATCGACCAAAATGAT TGAAAGGGAGATCAACTCGGTCAACGACAACCCGTTGATCGATGTCTCGAGAGGGAAGGCAATCCACGGAGGGAACTTCCAGGGAACACCGATCGGTGTC TCGATGGACAACACTCGTTTGGCAGTTGCTTCAATTGGGAAGCTCATGTTTGCGCAGTTCTCCGAACTTGTCAACGACTTTTACAACAACGGTCTGCCAT CGAACTTAACAGGTGGACGAAACCCCAGCTTGGACTACGGGTTCAAGGGGGCTGAAATCGCAATGGCATCCTACTGCTCCGAGCTTCAGTTCCTGGCAAA TCCAGTTACAAACCACGTACAGAGCGCTGAACAACACAACCAAGATGTCAACTCATTGGGACTGATTTCGGCTAGGAAGACTGCCGAAGCTGTGGACATA TTAAAGCTGATGTCGACAACTTACTTGGTCGCTCTATGCCAAGCGGTCGACTTAAGGTATATCGAGGAGAATCTGAAGCAGACAGTTAAGAACACGATCA GCCAAGTAGCGAAGAAAGTACTCCTAACCAACGGGGAGGTGCTCCACCCATCGAGATTCTGCGAGAAGGAGCTGTTGAATGTCGCGGAGAGGGAGTACTT GTTTGCATATGCTGACGATCCTTGCAGCGCAACCTACCCTCTGATGCAGAAGCTGAGAGGGGTGCTGGTGGAGCACGCGTTGCTGAACGGTGAGAGCGAG AAGGACTCGAGCACTTCCATCTTCCACAAGATTGCAGCTTTTGAGGCGGAGCTGAAGGCTATCCTGCCGAAAGAAGTCGAGAATGCGAGGAGCGAGCTAG AGAATGGGAACCCGGCTATTCCGAACAGGATTAAAGAGTGCAGGTCGTATCCGTTGTACAAGTTTGTGAGGGAGGAAGTTGGTACCGGTTTGCTGACGGG TGAGAAGGTTAAGTCACCTGGTGAGGAATTTGACAAGGTGTTCACTGCTATGTGTGAAGGGAAGTTGATTGATCCTTTGTTGGAGTGCCTCAAAGAATGG AATGGTGCTCCTCTTCCTATCTGCTAG
AA sequence Show only first row Show all	>Lus10023531 pacid=23160576 polypeptide=Lus10023531 locus=Lus10023531.g ID=Lus10023531.BGIv1.0 annot-version=v1.0 MELCSNNENNNNGGGFSLADPLNWGMAAESMKGSHLEEVKRMVAESRSPVVKLAGQTLSIAQVVAISRSDAAAELDEEARPRVKASSDWVMESMNKGTDS YGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNGTESTHTLPYSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLV PLSYIAGLLTGRPNSKAVGPKGESLNATQAFEAAGITGGFFELQPKEGLAMVNGTAVGSGMASMVLFDANILAVMSEVLSAIFAEVMQGKPEFTDHLTHK LKHHPGQIEAAAIMEHILKGSSYVKEAEKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRSSTKMIEREINSVNDNPLIDVSRGKAIHGGNFQGTPIGV SMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDI LKLMSTTYLVALCQAVDLRYIEENLKQTVKNTISQVAKKVLLTNGEVLHPSRFCEKELLNVAEREYLFAYADDPCSATYPLMQKLRGVLVEHALLNGESE KDSSTSIFHKIAAFEAELKAILPKEVENARSELENGNPAIPNRIKECRSYPLYKFVREEVGTGLLTGEKVKSPGEEFDKVFTAMCEGKLIDPLLECLKEW NGAPLPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	2.2	0.9725
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	3.2	0.9667
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10041241 [exp]	3.9	0.9430
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	4.6	0.9382
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	5.5	0.9654
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	5.7	0.9505
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	6.9	0.9596
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	8.5	0.9504
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	8.8	0.9545
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	10.1	0.9418

Compare expression of checked genes

Lus10023531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.