Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03300 599 / 0 ADK2 adenosine kinase 2 (.1) AT3G09820 583 / 0 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT1G17160 64 / 3e-11 pfkB-like carbohydrate kinase family protein (.1.2) AT4G27600 60 / 1e-09 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT1G19600 53 / 1e-07 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 52 / 2e-07 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040417 [exp] 693 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10023197 [exp] 588 / 0 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10009220 [exp] 555 / 0 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10023021 [exp] 542 / 0 AT5G03300 546 / 0.0 adenosine kinase 2 (.1) Lus10042467 [exp] 62 / 2e-10 AT1G17160 497 / 6e-177 pfkB-like carbohydrate kinase family protein (.1.2) Lus10026199 [exp] 62 / 2e-10 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10024268 [exp] 53 / 1e-07 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10007397 [exp] 51 / 5e-07 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038100 [exp] 625 / 0 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.010G224300 [exp] 622 / 0 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.002G034000 [exp] 62 / 2e-10 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 59 / 2e-09 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.011G114100 [exp] 54 / 6e-08 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.013G078600 [exp] 48 / 5e-06 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 47 / 1e-05 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 42 / 0.0005 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10023532 pacid=23160537 polypeptide=Lus10023532 locus=Lus10023532.g ID=Lus10023532.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAAGGTATCTTGTTGGGCATGGGAAACCCGCTCCTCGACATCTCTGCTGTTGTCGACGACGGCTTCTTGTCCAAGTATGGCGTCACGCTGA ACAATGCTATTCTTGCCGAGGACAAGCACTTGCCCATGTATGATGAAATGAGCAGCAAATATTCTGTCGAGTACATCGCTGGAGGTGCCACTCAGAACTC CATCAGAGTTGCTCAGTGGATGCTCCAAAAACCTGGTGTAACTAGCTACATGGGTTGCATTGGGAAAGACAAGTATGGTGAGGAGATGAAGAAAAACGCC ACGGACGCTGGCTTGAATGTCCATTATTATGAAGATGAAGCTGCTCCTACTGGGACATGTGCTGTCTGTGTTGTTGGTGGTGAGAGGTCACTTATTGCAA ATTTGTCTGCTGCAAACTGTTACAAAATTGACCATTTGAAGCAAGCTGAGAACTGGTCTTTAGTTGAGAAGGCCAAATACTACTACATTGCCGGATTTTT CTTGACCGTATCTCCCGAATCTATCCTTCTTGTGGCTGAGCATGCAGCTGCCAAGAACAAGATCTTCTCAACCAACCTTTCTGCTCCATTTATCTGCGAG TTCTTCAAGGACGCCCAAATGAAAGTTCTACCTTATGCGGACTACGTGTTTGGCAATGAGACTGAAGCTAGAACATTCTCTAAGGTCCATGGATGGGAGA CTGAGAATGTAGAGGAGATTGCTGTTAAGATCTCCGAGTTGCCCAAGGCTTCAGATGCACGCAAGAGGATTACTGTTATCACCCAGGGAGCTGACCCAGT TGTCGTTGCACAAGACGGGAAGGTGAAGACTTTCCCAGTCACCTTGTTGCCTAAGGAAAAGCTCGTGGACACCAATGGAGCTGGGGACGCCTTTGTCGGA GGGTTCTTGTCGCAGCTGGTGCAGGAGAAGCCAATTGAAGACTGTGTTAGAGCTGGAATCTACGCGGCCAATGTGATCATCCAGAGGTCAGGATGCACAT ACCCAGAGAAGCCAGAGTTTAACTAG
AA sequence Show only first row Show all	>Lus10023532 pacid=23160537 polypeptide=Lus10023532 locus=Lus10023532.g ID=Lus10023532.BGIv1.0 annot-version=v1.0 MASEGILLGMGNPLLDISAVVDDGFLSKYGVTLNNAILAEDKHLPMYDEMSSKYSVEYIAGGATQNSIRVAQWMLQKPGVTSYMGCIGKDKYGEEMKKNA TDAGLNVHYYEDEAAPTGTCAVCVVGGERSLIANLSAANCYKIDHLKQAENWSLVEKAKYYYIAGFFLTVSPESILLVAEHAAAKNKIFSTNLSAPFICE FFKDAQMKVLPYADYVFGNETEARTFSKVHGWETENVEEIAVKISELPKASDARKRITVITQGADPVVVAQDGKVKTFPVTLLPKEKLVDTNGAGDAFVG GFLSQLVQEKPIEDCVRAGIYAANVIIQRSGCTYPEKPEFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	0	1
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	1.0	0.9881
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	1.4	0.9729
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	2.4	0.9712
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	3.5	0.9528
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	5.3	0.9190
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	5.5	0.9488
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	6.0	0.9278
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	8.0	0.9160
AT1G26140			unknown protein		Lus10017899 [exp]	8.6	0.8758
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	8.9	0.9143

Compare expression of checked genes

Lus10023532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.