Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39020 315 / 1e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39030 288 / 6e-98 NATA1 N-acetyltransferase activity 1, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040418 [exp] 431 / 2e-154 AT2G39020 308 / 4e-107 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037700 [exp] 333 / 7e-116 AT2G39020 301 / 2e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G224800 [exp] 329 / 3e-114 AT2G39020 303 / 7e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G037600 [exp] 295 / 1e-100 AT2G39020 273 / 6e-93 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10023533 pacid=23160566 polypeptide=Lus10023533 locus=Lus10023533.g ID=Lus10023533.BGIv1.0 annot-version=v1.0 ATGTGTCAATCCATAGTCCGACCACCCCTGCAAAAAGCTCCCACCGACTTCCTTGACATTGTTGCCAAATATCAGATTCCCCCCCCACTACTTATCCCAC CATCCCATCCTCCCCCGTATTTTCTCCAAAAGCCAACAACTTTCGATTCCCATTTTCCTCATCCAGAAACCCCGACACTCTTTCACTTCACTGTATCACC AATGGCCGCTGCAGCACCACCGCCGCCACCGTCCCCGACTCCCAACCCACCAACGGGATTACCAAACTCCGATACCAACGCCCCAGTCGGCTACCCACTC TTCTCCCGCATCCGCCTCGCCACCCCAACCGACGTCCCCCACATCCACAAGCTAATCCACCAAATGGCCGTCTTCGAGAAGCTCACCCATCTTTTCTCCG CCACCGAATCAAACCTCTCCTCCTCCCTCTTCACCTCCCCTCCTTTCCAATCATTCACCGTCTTCCTCTTAGAAATCTCCCGCTCCCCTTTTCCCAACGC CCCAACTCCTTCGCCTGTTTCCACCACCCACCGCATCGTTAACCTCGACCTTCCCGTCATCGACCCGGAGGCTGAGACCTTCAAGACCGGCGATGATGTT GTGGTTGCTGGATTCGTGCTGTTCTTCCCCAATTACTCCAGCTTCTTGGCCAAGCCTGGGTTTTATGTTGAAGATCTGTTCGTGAGAGAGTGTTATAGGA GGAAAGGGTTTGGCAAGATGCTGCTTTCGGCTGTGGCGAGTCAGGCTGTGAAGATGGGGTATGGGAGGGTTGAGTGGGTTGTGCTTGATTGGAATGTGAA TGCCATCAATTTTTATGAAGGGATGGGTGCGAAAGTGTTGCCTGAGTGGCGCATTTGCAGGCTGACTGGCTCTGAACTTGAAGCCTATGGCGATTCTGCT CCTGCTCTGTAG
AA sequence Show only first row Show all	>Lus10023533 pacid=23160566 polypeptide=Lus10023533 locus=Lus10023533.g ID=Lus10023533.BGIv1.0 annot-version=v1.0 MCQSIVRPPLQKAPTDFLDIVAKYQIPPPLLIPPSHPPPYFLQKPTTFDSHFPHPETPTLFHFTVSPMAAAAPPPPPSPTPNPPTGLPNSDTNAPVGYPL FSRIRLATPTDVPHIHKLIHQMAVFEKLTHLFSATESNLSSSLFTSPPFQSFTVFLLEISRSPFPNAPTPSPVSTTHRIVNLDLPVIDPEAETFKTGDDV VVAGFVLFFPNYSSFLAKPGFYVEDLFVRECYRRKGFGKMLLSAVASQAVKMGYGRVEWVVLDWNVNAINFYEGMGAKVLPEWRICRLTGSELEAYGDSA PAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	0	1
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	1.7	0.9424
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	2.4	0.9327
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	2.8	0.9400
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	3.2	0.9298
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	3.5	0.9325
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	5.0	0.8882
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	5.7	0.9088
AT1G66080			unknown protein		Lus10031356 [exp]	6.9	0.9180
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030223 [exp]	7.1	0.8694
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10017397 [exp]	8.1	0.9065

Compare expression of checked genes

Lus10023533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.