Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 355 / 1e-123 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040419 [exp] 561 / 0 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10009215 [exp] 420 / 3e-149 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023535 [exp] 404 / 7e-143 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10009216 [exp] 404 / 1e-142 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10040420 [exp] 403 / 1e-142 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10037985 [exp] 397 / 5e-140 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10001868 [exp] 355 / 1e-123 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10010137 [exp] 348 / 1e-120 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10037984 [exp] 345 / 6e-118 AT5G24090 322 / 1e-108 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242000 [exp] 421 / 2e-149 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.014G091700 [exp] 419 / 1e-148 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G165700 [exp] 416 / 1e-147 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091600 [exp] 368 / 2e-128 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 367 / 4e-128 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.015G024000 [exp] 352 / 3e-122 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024100 [exp] 351 / 4e-122 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G023900 [exp] 343 / 7e-119 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G024150 [exp] 343 / 7e-119 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.012G033866 [exp] 341 / 3e-118 AT5G24090 352 / 3e-122 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10023534 pacid=23160461 polypeptide=Lus10023534 locus=Lus10023534.g ID=Lus10023534.BGIv1.0 annot-version=v1.0 ATGTCAGCTTTTTCCAGGGCAGCAACCTCACTAATGTGGCGCTTATTGTCAATGCTCAAGAGTTTAGAAGCTGGAAGCATAGCGATCTACTGGGGACAAA ACGGAAATGAAGCGAGCCTGGAAGAGACTTGTGCAACTGGAGACTACAGATATGTGATAATAGCTTTCCTGCCAACATTTGGCAACAGCCAAACGCCGAC GATCAACCTCGCCGGGCATTGCAATCTGACATCCGGAGGCTGTGAAGGACTAAGCTCCGAGATAAAGTCGTGTCAAGAGAAAGGTGTTAAGGTCTTGCTC TCCATTGGAGGTGGAGTTGGCAGTTACTATCTCACAAGTACAGACGACGCAAGAAAAGTCGCAACTTACCTGTGGGACAACTTTCTGGGAGGGCATTCCT CATCAAGGCCACTCGGTGAGGCAGTTCTGGACGGGATTGATTTTGACATTGAAGGAGGGACTCCCGAGCACTGGAGCGATCTCGCAAGGTTCCTGAAACA TCACAACAATGGGGGGAATAAGCAAGTGTATGTAACTGCAGCTCCCCAGTGTATATTCCCTGATGCATGGGTTGGAAGCGCACTCACCACAGGCCTTTTC GACTACCTTTGGGTGCAATTGTACAACAACCCTCCTTGCCAATACTCCGATGGGAGCATCGATGGACTCGAAGATGCTTGGCATCGATGGACTTCCTCCA TTCCCACTAAAAAGGTCTTCTTGGGGCTCCCTGCTGCAGAAGGTGCAGCAGGCAGTGGTTTTATCCCTGCTCATGATCCGATCAACAAGGTATTGCCTAC AATCAAGAAATCTAAGAAGTACGGTGGCGTCATGTTGTGGTCAAAGTACTATGATGAGCAAAGTGGATACAGTAAGGCCATTAAGAACCATGTCTGA
AA sequence Show only first row Show all	>Lus10023534 pacid=23160461 polypeptide=Lus10023534 locus=Lus10023534.g ID=Lus10023534.BGIv1.0 annot-version=v1.0 MSAFSRAATSLMWRLLSMLKSLEAGSIAIYWGQNGNEASLEETCATGDYRYVIIAFLPTFGNSQTPTINLAGHCNLTSGGCEGLSSEIKSCQEKGVKVLL SIGGGVGSYYLTSTDDARKVATYLWDNFLGGHSSSRPLGEAVLDGIDFDIEGGTPEHWSDLARFLKHHNNGGNKQVYVTAAPQCIFPDAWVGSALTTGLF DYLWVQLYNNPPCQYSDGSIDGLEDAWHRWTSSIPTKKVFLGLPAAEGAAGSGFIPAHDPINKVLPTIKKSKKYGGVMLWSKYYDEQSGYSKAIKNHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	1.0	0.8644
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	2.4	0.8491
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	4.5	0.8495
					Lus10020900 [exp]	5.9	0.8392
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	7.5	0.7950
AT4G34950			Major facilitator superfamily ...		Lus10010805 [exp]	7.7	0.7857
					Lus10011017 [exp]	9.2	0.8095
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	9.4	0.7508
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	10.4	0.7549
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	11.5	0.7720

Compare expression of checked genes

Lus10023534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.