Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10480 325 / 1e-107 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 324 / 1e-107 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G04410 256 / 6e-80 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10500 248 / 1e-76 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G17730 205 / 8e-64 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G34190 203 / 1e-59 NAC ANAC017 NAC domain containing protein 17 (.1) AT5G64060 197 / 1e-59 NAC ANAC103 NAC domain containing protein 103 (.1) AT1G34180 201 / 6e-59 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT5G46590 190 / 2e-57 NAC ANAC096 NAC domain containing protein 96 (.1) AT5G09330 195 / 4e-57 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040422 [exp] 456 / 4e-160 AT3G10480 263 / 6e-84 NAC domain containing protein 50 (.1.2.3) Lus10037939 [exp] 448 / 1e-156 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 429 / 2e-139 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028824 [exp] 237 / 2e-72 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10017458 [exp] 215 / 2e-64 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10042284 [exp] 206 / 1e-63 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 206 / 3e-63 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10028713 [exp] 204 / 1e-59 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10007377 [exp] 194 / 1e-55 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229700 [exp] 390 / 1e-133 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.008G031800 [exp] 287 / 7e-92 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 267 / 3e-84 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.015G030200 [exp] 213 / 3e-67 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 201 / 5e-61 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.002G061300 [exp] 206 / 2e-60 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.012G038100 [exp] 196 / 9e-60 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.005G058900 [exp] 198 / 3e-59 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.010G174600 [exp] 196 / 3e-59 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.005G200100 [exp] 202 / 5e-59 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10023537 pacid=23160599 polypeptide=Lus10023537 locus=Lus10023537.g ID=Lus10023537.BGIv1.0 annot-version=v1.0 ATGGCTCCACAATCAGAAATCCCCAACGCGCTCCCGTTACCTCCGGCGGCGGCGGCGGCTAGCACTGCCACTTTTGCGTTAGCTCCGGCTGCGCCGCCTC GTAAGACGCAGCCAGCGGCTTCCAGTACTACTGCTTTGGCCCCTGGTTTCCGATTCCATCCAACTGATGAAGAGCTGGTTAGCTATTACTTGAGGCGTAA GGTTGGGAGCAAGCCCGTCCGCTTCAACGCCATCGCTGAAGTTGATATCTACCGAAACGAGCCCTGGGAACTCGCCGACAAGTCAAGGTTGAAAACCAGA GACCAAGAGTGGTACTTCTATGGTGCATTGGATAGGAAGTACGGAAATGGTGGAAGAATGAACAGAGCCACTGGCACTGGCTACTGGAAAGCCACCGGGA AAGACCGGGGAATTCGTCGAGACAACCAACTCATTGCAATGAAGAAGACCCTTGTGTTCCACAATGGACGAGCCCCCGGGGGCCATCGTACCAATTGGGT CATGCATGAGTACCGCTTAGTTGACGAGGAGTTGGAGAGAATCGGCAATCTTCAGGGAGATTCATTTGTGCTATGTAGAGTGTTTCACAAGAACAATATC GGACCCCCAAATGGAAACCGATATGCTCCTTTTATGGAGGAAGAGTGGGATGATGATAATAAGCCAGTCCTTGTCCCTGGAGAAGATGTGGCAGATGAAC GTGTAGCTTGCAGTGAAGCTTATGCTGAGATGAACCGAGTTGAGCAGGACAAGCTTTCAATTAGCAAAGAACCATTCGACGTGAACGAAGTTCCGAAGGT GACCCGAGATCTCTTATCCCTGTGCAAGAACGAAACCGTGGAAGAGATGGAGGAGCTGGATGCTCCGATGACCTCTGCTCATCCACCACAACCACAACAG ACACGATCGCACCGTCGCCCCCCCCCCCCGCCTCCCCCAACCACAGCCATCTCTGCACTGCTGGAGTTCTCTCTGATGGAGCCTAAGGAACGTACGCCTT CCCCGAAGAAACCCACATCTAGTAGTTCCGCTAGCCTCGAGTCTCTGGTCCCTTCTGGGTGCATGAAGCTCATCAATGACCTGCAGAGCGAGGTCCACAA AGTCTCTGTCGATAGAGAGACTCTGAAGCTGGAACTGATGAGGGCTAATGCCATGGCCAACATTCTCCAGTCGAGGATCGATCATCTCAATGAGGAGAAT AAGGATCTGAAAAGGAATCTCCGTGAAGGCCATTAG
AA sequence Show only first row Show all	>Lus10023537 pacid=23160599 polypeptide=Lus10023537 locus=Lus10023537.g ID=Lus10023537.BGIv1.0 annot-version=v1.0 MAPQSEIPNALPLPPAAAAASTATFALAPAAPPRKTQPAASSTTALAPGFRFHPTDEELVSYYLRRKVGSKPVRFNAIAEVDIYRNEPWELADKSRLKTR DQEWYFYGALDRKYGNGGRMNRATGTGYWKATGKDRGIRRDNQLIAMKKTLVFHNGRAPGGHRTNWVMHEYRLVDEELERIGNLQGDSFVLCRVFHKNNI GPPNGNRYAPFMEEEWDDDNKPVLVPGEDVADERVACSEAYAEMNRVEQDKLSISKEPFDVNEVPKVTRDLLSLCKNETVEEMEELDAPMTSAHPPQPQQ TRSHRRPPPPPPPTTAISALLEFSLMEPKERTPSPKKPTSSSSASLESLVPSGCMKLINDLQSEVHKVSVDRETLKLELMRANAMANILQSRIDHLNEEN KDLKRNLREGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	0	1
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	4.7	0.8389
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	4.8	0.8450
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	7.7	0.8239
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	8.1	0.8368
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	8.7	0.8089
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	9.2	0.7694
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	10.9	0.8032
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	14.8	0.7899
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10029573 [exp]	15.0	0.7899
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Lus10006202 [exp]	21.0	0.7080

Compare expression of checked genes

Lus10023537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.