Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040423 [exp] 81 / 3e-19 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 59 / 8e-11 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 58 / 1e-10 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023538 pacid=23160508 polypeptide=Lus10023538 locus=Lus10023538.g ID=Lus10023538.BGIv1.0 annot-version=v1.0 ATGGCAGCAACCGCTTATTTCAATTTCTCTTCTTTATCTCCTCCATCAACTCCTTCTTCCAGAGGCCCCACCTCCCACAATTACTCCTTCAAGATTCTCA TGGTCGGAGATCCGCCGTCGGCGCAGGAGCAGTATTCTCCTCAGATTCATTTCCGATTCCGATCACCACCCTTCCCCCACTATCGCTGGACAGGAGAGGT TTGGAGCGTTAACAACATCTTATTACAGAGGACCACATGGCATCATACTAGATATATGAAGTACCTACTCTACTGGAAAAGGGTTCCGGAGTCGTCAAGG CACCAACCATCCGGGCAGACAGACAAGCGTCCCAGCAAGCCGGCAGAAATCGTTGCTCTTGACGACAGCATCCTTCGTGGAAACTGGAAACATACATGCA CGGTAGAATCATCCAGCAGTAGTTTCACCCTGACAGGTGCTAAGTGA
AA sequence Show only first row Show all	>Lus10023538 pacid=23160508 polypeptide=Lus10023538 locus=Lus10023538.g ID=Lus10023538.BGIv1.0 annot-version=v1.0 MAATAYFNFSSLSPPSTPSSRGPTSHNYSFKILMVGDPPSAQEQYSPQIHFRFRSPPFPHYRWTGEVWSVNNILLQRTTWHHTRYMKYLLYWKRVPESSR HQPSGQTDKRPSKPAEIVALDDSILRGNWKHTCTVESSSSSFTLTGAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023538 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	1.4	0.8475
					Lus10024679 [exp]	3.2	0.7554
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10002868 [exp]	3.5	0.7237
AT1G64160			Disease resistance-responsive ...		Lus10028749 [exp]	3.9	0.6736
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	4.2	0.7477
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	12.0	0.6443
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	12.7	0.6663
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10032323 [exp]	17.0	0.6537
AT2G15220			Plant basic secretory protein ...		Lus10019805 [exp]	18.2	0.6165
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	20.0	0.6099

Compare expression of checked genes

Lus10023538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.