Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04390 121 / 5e-32 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 111 / 4e-28 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 107 / 2e-27 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 84 / 9e-19 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 64 / 3e-12 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53600 60 / 6e-11 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28710 59 / 1e-10 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G56200 61 / 2e-10 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT3G46080 59 / 2e-10 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 57 / 5e-10 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040425 [exp] 183 / 6e-58 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10037942 [exp] 101 / 4e-24 AT5G04390 198 / 2e-59 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 94 / 2e-22 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 88 / 2e-20 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 87 / 1e-19 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 73 / 4e-15 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040312 [exp] 71 / 2e-14 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021509 [exp] 68 / 2e-13 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1) Lus10023433 [exp] 67 / 3e-13 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032300 [exp] 123 / 3e-33 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 120 / 6e-32 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 102 / 2e-25 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 102 / 2e-25 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 100 / 1e-24 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 95 / 4e-23 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 74 / 8e-16 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G051200 [exp] 69 / 3e-14 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 69 / 7e-14 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 65 / 2e-12 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023540 pacid=23160593 polypeptide=Lus10023540 locus=Lus10023540.g ID=Lus10023540.BGIv1.0 annot-version=v1.0 ATGGCAAAGCCGTTGCCTGTGCTGCCACCACCAGTGGTGCTTACTGTTCTCCTCGGTGGGAGCACCGAGGAAGAAGAGGACATGGCAAATTGTTTGATCC TACTTGCGCAGGGGAGTTCTTCCTTCGTCACAAATAATCACGTTAATGCCGCAATTTCCTCAGCCGTTAACAACAACAATATCGCCAGCGGAAAATTCAC GAGCAGGAAATTCATGGAGACAGGCAGCGGAGTCGAGGGCGGAGGGAAAGTAGGGTACTATGTATACGAGTGCAGGACATGCAACAGGACATTCCCTTCG TTTCAAGCATTAGGTGGACATCGTGCGAGCCACAAGAAGCCCAAGAACCTCCTGGTCACTAATAATACATTGTTAGCGACAGCCCCTTCGTACAATGAGG AAACCAACTTCCTCCAACTGAACAGTGGCGGAGGCCTCACCGCTAGTAATCACAAGGGGAACAATAGTAACTACAATCGGGTGCACGAGTGCGGACAATG CGGGGCGGAATTCAACTCAGGGCAAGCATTGAGAGGCCACATGAGGAGGCACCGAGCTCCTCCGACAACCATCGCAACAAACCTGTCGTTGTTAACAAGT AACAACGGCGGTCTCAGTAGCTACAAAAATACGGCCGCTAATAATAATAAAGTTGGGGGAACTTCTGGCGAGGAGAGACTAGTATTGGGGAAGAGAGGGA GGAGCCTGAGGACAACGTCGTTGGACTTGGATCTCAACCAGCTTCCGGCACCGGAGGAAAAGCAGCCGATCACAAACTTACCGCCGGCGAACAACAAACC AACAACGGTGTTTCCCAGTCAAGCTTTGGTGGGTTGCCATTACTGA
AA sequence Show only first row Show all	>Lus10023540 pacid=23160593 polypeptide=Lus10023540 locus=Lus10023540.g ID=Lus10023540.BGIv1.0 annot-version=v1.0 MAKPLPVLPPPVVLTVLLGGSTEEEEDMANCLILLAQGSSSFVTNNHVNAAISSAVNNNNIASGKFTSRKFMETGSGVEGGGKVGYYVYECRTCNRTFPS FQALGGHRASHKKPKNLLVTNNTLLATAPSYNEETNFLQLNSGGGLTASNHKGNNSNYNRVHECGQCGAEFNSGQALRGHMRRHRAPPTTIATNLSLLTS NNGGLSSYKNTAANNNKVGGTSGEERLVLGKRGRSLRTTSLDLDLNQLPAPEEKQPITNLPPANNKPTTVFPSQALVGCHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	0	1
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	1.0	0.9638
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	1.4	0.9566
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10010762 [exp]	1.7	0.9544
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	5.9	0.7427
AT4G35500			Protein kinase superfamily pro...		Lus10035984 [exp]	8.9	0.8458
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	18.3	0.7056
					Lus10000079 [exp]	23.9	0.7980
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10029103 [exp]	41.5	0.7565
					Lus10006316 [exp]	50.2	0.7420
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10043362 [exp]	61.3	0.6715

Compare expression of checked genes

Lus10023540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.