Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 120 / 8e-32 Serine protease inhibitor (SERPIN) family protein (.1) AT2G14540 108 / 3e-27 ATSRP2 serpin 2 (.1) AT1G62170 104 / 1e-25 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT2G25240 103 / 1e-25 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 100 / 3e-24 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 97 / 4e-23 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64030 95 / 2e-22 ATSRP3 serpin 3 (.1) AT2G35580 92 / 1e-21 Serine protease inhibitor (SERPIN) family protein (.1) AT1G51330 87 / 9e-21 Serine protease inhibitor (SERPIN) family protein (.1) AT1G63280 84 / 2e-20 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032754 [exp] 140 / 2e-39 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 137 / 3e-38 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 91 / 9e-21 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005089 [exp] 89 / 3e-20 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 86 / 3e-19 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040426 [exp] 87 / 4e-19 AT5G04310 380 / 8e-125 Pectin lyase-like superfamily protein (.1) Lus10019009 [exp] 54 / 3e-08 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 53 / 3e-08 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039336 [exp] 52 / 2e-07 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036000 [exp] 122 / 1e-32 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1) Potri.017G100900 [exp] 92 / 2e-21 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10023541 pacid=23160614 polypeptide=Lus10023541 locus=Lus10023541.g ID=Lus10023541.BGIv1.0 annot-version=v1.0 ATGATGGACAAAAAGCCCAAGGTAAGGTCTGTGCCAACGTTCATTAATAGATGCAGAGAAACAAAGAAACATATACATGCAGGTATTCGGCTCGAAAAAA GTTCGATTGAATCTCGTCTCGAACTTAAACGGCCAAGCTCGAACGGATCCTGCCTGGCTGCTTCTCGTAAAGTCGATTTCCAATCCAAGGCAGCTGAAGT AGTTGTTGAAGTGAATGATTGGGCCAATAGACGGACGAACGGAATCGTAGAGGAAATTGTTCCTCGAGGGGCAGTTAACAACTTAACACCGCTAATTTAC GCTAATGCGCTCTTCTTCGAAGGAGTTTGGAACCAGAATTTCGATGCATCGGCAACTAAACGCTATGATTTTCACCTACTGAATGATGGATCGGTCCGTG TACCGTTTATGACCAGCGAAGAGGACCAGTATGTTTCCTTAACGAAGGAATTGGGGTTGGTCTTGCCTTTCTCTAACGAAGCAGACTTTACAGAGATGGT GGAGGAATCTTCCGACGATGTGACTTTCTCCGAGGTATTCCACAAATCTTCTGTGGAAGTGAACGGAGAAGGTACGGAAGCTGGAGCTGCTTCTGTTACT ATGATGGATATGTCGAGTCTGGGTGGATATGGGGAAATTTATAAACACTACTTTGTAGCGGATCATCCGGTCCTCTTCTTCATTAAAGAAGACACCACGG GAACGGTTCTGTTCAGCGGAGACATCCTGGATCCATCGCTGCCTGCTTAG
AA sequence Show only first row Show all	>Lus10023541 pacid=23160614 polypeptide=Lus10023541 locus=Lus10023541.g ID=Lus10023541.BGIv1.0 annot-version=v1.0 MMDKKPKVRSVPTFINRCRETKKHIHAGIRLEKSSIESRLELKRPSSNGSCLAASRKVDFQSKAAEVVVEVNDWANRRTNGIVEEIVPRGAVNNLTPLIY ANALFFEGVWNQNFDASATKRYDFHLLNDGSVRVPFMTSEEDQYVSLTKELGLVLPFSNEADFTEMVEESSDDVTFSEVFHKSSVEVNGEGTEAGAASVT MMDMSSLGGYGEIYKHYFVADHPVLFFIKEDTTGTVLFSGDILDPSLPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62170			Serine protease inhibitor (SER...		Lus10023541 [exp]	0	1

Compare expression of checked genes

Lus10023541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.