Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04310 540 / 0 Pectin lyase-like superfamily protein (.1) AT3G54920 511 / 1e-178 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT3G53190 490 / 9e-171 Pectin lyase-like superfamily protein (.1) AT4G13710 460 / 2e-159 Pectin lyase-like superfamily protein (.1.2) AT3G07010 439 / 6e-152 Pectin lyase-like superfamily protein (.1) AT5G63180 440 / 8e-152 Pectin lyase-like superfamily protein (.1) AT1G67750 435 / 2e-150 Pectate lyase family protein (.1) AT1G04680 433 / 2e-149 Pectin lyase-like superfamily protein (.1) AT4G24780 427 / 4e-147 Pectin lyase-like superfamily protein (.1.2) AT3G24230 420 / 9e-144 Pectate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037945 [exp] 629 / 0 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10014414 [exp] 498 / 7e-174 AT3G53190 703 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023917 [exp] 486 / 6e-169 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 457 / 2e-158 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 441 / 5e-152 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 439 / 8e-152 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10022817 [exp] 440 / 9e-152 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 439 / 1e-151 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011400 [exp] 438 / 1e-151 AT1G67750 623 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229000 [exp] 566 / 0 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G032700 [exp] 549 / 0 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 491 / 4e-171 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 446 / 6e-154 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 446 / 7e-154 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 428 / 2e-147 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 427 / 2e-147 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 427 / 8e-147 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.002G238800 [exp] 426 / 2e-146 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 426 / 2e-146 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10023542 pacid=23160592 polypeptide=Lus10023542 locus=Lus10023542.g ID=Lus10023542.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTCTTCAAGAATGCTTCCTATTAGCTTCTGCATTCTCTTCCTCTCTTCTATCCTCAACTCAGTTGCCGATTCTAAGTTCATCAACCTCA CTCTCCCTCACCAGCACCCTTACCCAGATGATGTTGCTAACGATGTTCACAGACGGGTCAACCAGTCCCTATCCCGAAGGCTACTTCAGGCGGGGTCCAC TTGCCAAACGGGCAACCCGATCGACGACTGCTGGCGGTGCGACCCCAACTGGCTCAACAACCGCCAACACCTCGCCGATTGCTCCATCGGATTCGGCCAC GGTGCGTTGGGCGGACGCGGCGGTCAAATCTACGTCGTCACTGACTCCTCCGACCACGACCCGTCATCCCCGACACCGGGAACCCTCCGCTACGGCGTGA TCCAAGACGTCCCGCTCTGGATCATCTTTGCCGCCGACATGACCATCTCCTTAAAACACGAGCTCATCTTCAACAGCTACAAGACCGTCGACGGCCGAGG AGCCAATGTCCACATCACGGGGAACGGATGCCTGACTTTACAGTACGGATGCCTCACTTTACAGTACGTCAACCATGTGATCATCCACAACGTCAGAATC TATGACTGCAAGCCGTCCGGGAACACCAACGTCGCCTCGTCGCCTACCCACGTCGGATTCAGGGGAAGATCCGACGGCGACGGGATCTCCCTATTCGGAG CCCACAATGTGTGGATTGACCATTGTACCCTTTCGTCATGTACGGATGGATTGATCGATGCGATTATGGGGTCAACCGGGATTACGATTTCGAACAATTT CTTCTCCCGGCATAACGAAGTTATGCTGATGGGACACGACGATCGGTTCGTATTGGATCGAGGGATGCAGGTGACGATTGCGTTCAATAGGTTCGGGGAA GAGCTAGTGCAGAGGATGCCGAGGTGTAGGCATGGCTATATACATGTGGTGAACAATGATTTCACTTACTGGAAAATGTATGCCATCGGCGGTAGCGCTA GTCCGACAATTAATAGCCAGGGGAATCGGTATGTTGCCCCGGTCGATCCCGATGCTAAAGAGGTGACGAAAAGGGTAGAGACAGACGAAAAAGAGTGGGA GAGGTGGAATTGGAGGACGGACGGGGACATAATGGTAAATGGGGCATTTTTCGTACCGTCGGGAGCCGGGGTGAGTGCCATGTATGAAAGGGCAACCAGC TTGAATGCCATGTCAGCCGCTCTTGTCGAACAGCTCACCTCGAACGCCGGCGTCCTAGGTGGCACCAGGGACACAGGGGGGATGCCATCGAACCCTGGAT TCAACGGAGGTGGGGCCGGCGGGACGACCTACACCGGCAGCTATGGGTCCCCCGGTGGTGACGGCAGCAGCGGCGGGGACGGTAATGTGTTTGGGATGAT ATTTGGGAGCGGGGCGGCGGATGCGGCGGCGGTGCCCACATCGTCGGTGTGGGAAATTGAATACTGGGCAAACAATTAA
AA sequence Show only first row Show all	>Lus10023542 pacid=23160592 polypeptide=Lus10023542 locus=Lus10023542.g ID=Lus10023542.BGIv1.0 annot-version=v1.0 MAAASSRMLPISFCILFLSSILNSVADSKFINLTLPHQHPYPDDVANDVHRRVNQSLSRRLLQAGSTCQTGNPIDDCWRCDPNWLNNRQHLADCSIGFGH GALGGRGGQIYVVTDSSDHDPSSPTPGTLRYGVIQDVPLWIIFAADMTISLKHELIFNSYKTVDGRGANVHITGNGCLTLQYGCLTLQYVNHVIIHNVRI YDCKPSGNTNVASSPTHVGFRGRSDGDGISLFGAHNVWIDHCTLSSCTDGLIDAIMGSTGITISNNFFSRHNEVMLMGHDDRFVLDRGMQVTIAFNRFGE ELVQRMPRCRHGYIHVVNNDFTYWKMYAIGGSASPTINSQGNRYVAPVDPDAKEVTKRVETDEKEWERWNWRTDGDIMVNGAFFVPSGAGVSAMYERATS LNAMSAALVEQLTSNAGVLGGTRDTGGMPSNPGFNGGGAGGTTYTGSYGSPGGDGSSGGDGNVFGMIFGSGAADAAAVPTSSVWEIEYWANN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04310			Pectin lyase-like superfamily ...		Lus10023542 [exp]	0	1
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	1.0	0.8119
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	6.0	0.7836
AT1G55790			Domain of unknown function (DU...		Lus10016345 [exp]	9.4	0.7449
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	9.7	0.8025
AT4G21450			PapD-like superfamily protein ...		Lus10018534 [exp]	15.0	0.7627
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	19.9	0.7652
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	22.6	0.7549
AT5G21070			unknown protein		Lus10025552 [exp]	25.8	0.7501
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	31.8	0.7411
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	32.2	0.7453

Compare expression of checked genes

Lus10023542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.