Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01930 277 / 4e-93 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G14685 268 / 1e-89 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT1G68120 255 / 1e-84 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1) AT2G35550 161 / 1e-48 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT5G42520 149 / 3e-43 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G21240 141 / 5e-40 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 137 / 7e-39 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040427 [exp] 562 / 0 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2) Lus10012389 [exp] 150 / 7e-43 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10031078 [exp] 148 / 1e-42 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10024313 [exp] 149 / 2e-42 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10035462 [exp] 149 / 3e-41 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 140 / 1e-39 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10042056 [exp] 140 / 2e-39 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101400 [exp] 353 / 4e-123 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.008G140200 [exp] 342 / 1e-118 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.012G040600 [exp] 301 / 1e-102 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2) Potri.015G032900 [exp] 289 / 1e-97 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 288 / 3e-97 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.012G040700 [exp] 273 / 1e-91 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.012G040800 [exp] 201 / 4e-63 AT1G14685 190 / 3e-59 basic pentacysteine 2 (.1.2.3) Potri.001G133900 [exp] 162 / 5e-49 AT2G35550 199 / 3e-64 basic pentacysteine 7 (.1.2.3.4) Potri.002G026700 [exp] 153 / 4e-44 AT5G42520 439 / 2e-155 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.005G235900 [exp] 152 / 6e-44 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [flax] [poplar] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Lus10023543 pacid=23160478 polypeptide=Lus10023543 locus=Lus10023543.g ID=Lus10023543.BGIv1.0 annot-version=v1.0 ATGGACGATGATGCGTTGAATATGCGCAATTGGGGAGGGTACTATGAGCCGTCATTCAGAGGGCATCTAAGTCTGCAGCTGACTTCGAACATGACGGATC GAGACACCAAGCATTTTCTGCCGGGCCGAAATGCGAATAACATTATGCTTGATGTCAATGCCGGTGGTGGAGGATTCCATCCTCGCGATTTCATGCTCTC CGAATCGCATGTCCCCATCAACTACATGAGGGACAGTTGGATCAACCAGAGGGATAGCAATAAGTATCCGAATCTGTTGGCTCCGAATCATAACTACGCT CATGTTTTCCCGGAAACATCAGGAGCTCACCCTCTGCAGGTGTTGCCTGCTCTCGATACTTCCATGGTTGGAGGATCGAGAGATGATGGAAAAATGTGTA AAGTCGAAGAGCAAGTGTTTGATAAAGAACCGGAACATCAACCAACGAAAAAAAGGCAGGGAAGTGGTGTGGCGAAAGCACCCAAGGCGAAGAAACCGAG GAAGCCAAAGGACCCGAACAGCAATCCGGTCCAGCGAGCAGCAAAGCCGCCAAAGAAGAGTATGGAGATGGTGATAAATGGGATTGATATGGACATATCG GGAATCCCTATCCCGGTCTGCTCTTGCACGGGAACTCCTCAGCAGTGTTATCGATGGGGGTGTGGTGGATGGCAGTCTGCTTGTTGTACTACCAATGTAT CAATGTATCCTTTGCCGATGAGCACCAAGAGGCGAGGTGCGAGGATAGCGGGAAGGAAGATGAGCCAGGGTGCGTTCAAGAAGGTGCTGGAGAAACTTGC AGCTGAAGGGTATAACTTCAGTAACCCGATTGATTTGAGGACTCACTGGGCTAAGCATGGTACCAATAAGTTTGTTACTATTAGGTAG
AA sequence Show only first row Show all	>Lus10023543 pacid=23160478 polypeptide=Lus10023543 locus=Lus10023543.g ID=Lus10023543.BGIv1.0 annot-version=v1.0 MDDDALNMRNWGGYYEPSFRGHLSLQLTSNMTDRDTKHFLPGRNANNIMLDVNAGGGGFHPRDFMLSESHVPINYMRDSWINQRDSNKYPNLLAPNHNYA HVFPETSGAHPLQVLPALDTSMVGGSRDDGKMCKVEEQVFDKEPEHQPTKKRQGSGVAKAPKAKKPRKPKDPNSNPVQRAAKPPKKSMEMVINGIDMDIS GIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFSNPIDLRTHWAKHGTNKFVTIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10023543 [exp]	0	1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	1.0	0.9173
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	3.2	0.8338
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10041035 [exp]	3.7	0.7486
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10004630 [exp]	6.3	0.7650
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	7.5	0.8040
AT5G57910			unknown protein		Lus10022161 [exp]	12.5	0.7802
AT1G24160			unknown protein		Lus10029213 [exp]	18.0	0.7492
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	21.2	0.7601
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	21.3	0.7667
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10037551 [exp]	21.8	0.7771

Compare expression of checked genes

Lus10023543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.