Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39160 64 / 8e-11 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040429 [exp] 437 / 4e-149 AT4G39160 173 / 2e-46 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019600 [exp] 92 / 1e-19 AT4G39160 166 / 9e-43 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023544 pacid=23160469 polypeptide=Lus10023544 locus=Lus10023544.g ID=Lus10023544.BGIv1.0 annot-version=v1.0 ATGCCTGCAGCAGAAGAGGCATATGTTTATGATCTATCGTCCTTGGGCTTCGACGATTTTGTTCCTTCAGCTACTGCTGCCTCTGAGCTCCCAATGAACT CAGAACAGACGGGTTATGAGCAAACATGTGTTTTGAACGAGGCAGGCAAAAATTCAAGGGAGGATGCTCCTGAAGTGGTGAAAAAGAATCGAGACAACAA TGAAAAGACTTCTTCATTAGGCAGTGACGGGAGTGGCGGCAAGCTCTCAATGCAGTTGAGGAAGCGATCAGGTGGTCGTCAAGTTCTTAACGAGTCTGAG CCTGTGAGTGGTCATGATGATAGCAGCTTCCTTGTTGAGTACCTGAAGGCCTCGGTACGAATGGAGATGAGGATTATGAATATCGGATCGAGGATTCTGA GGATGATGGAAATGTTGATGCTGGCGGGGAAAGAACTTCCAAGAAAAAGAAAGCTGCTAAAAGGTCAAAGAAATCAGCTTCGGGTGAAGAGAAGCCTGGT CGAAAGCGCAAGAAAGCCAGTGACACATCAGAACAGTTGGAGCAGAAGCAGCCAAAGAAGAAACTTTCCCATTCAACTCGCCGAAGGAAAAGATATCGCA AGAAATGACGAGTTGCTTAAGGTGCCCGAAGATGAAATAGAATTCCGGAGCTTGACCATGCGGGATATAATTGTTCTTGCTGAACACAAAGAACGGTTAG CTGCTAAAGATGCCAAAGCTTCTTTGCAAATTCCTTCGACTGATGAAAACACCGAGGAAGCCAACGATGAAGAGGATAACTCTGAGTCCGAGGAACCTGT AGACGTATACGAAACCCCTTTATTCAACAGCCATTCTTTCATGAATAGGACGCCCACCATGAGATGGTCAAAACCGGATACTGATTTATTTTATGAGGGA ATTCGACAGTTCGGATCCGCCGACAAATCAAGAATAAATTCAAAACTGAAGAGCGCCGACATCCATTCTTACTTTCTGACGCTCTGCAAAACCCCAACGG TGGTGTATAATAAGCTGGCGCAAGCTGCAGCTGATGAAGGAAGAGAGCCTCTCGATCTTACCGGAGAAAAAGAAGCAGATTTGAATCTGGAAACTAATGA GGAACCAGGAAAAAACTCGGAGCAGGACGAGCAGGCAACGGGTCAGGATCCTGGAGATAACCCTGATGAAGCCCATAGTAATGAGAAGATCGAGGACGAG GACGAGGATGATTTATTCAGCTCGTATAAATGTGAATTCTGA
AA sequence Show only first row Show all	>Lus10023544 pacid=23160469 polypeptide=Lus10023544 locus=Lus10023544.g ID=Lus10023544.BGIv1.0 annot-version=v1.0 MPAAEEAYVYDLSSLGFDDFVPSATAASELPMNSEQTGYEQTCVLNEAGKNSREDAPEVVKKNRDNNEKTSSLGSDGSGGKLSMQLRKRSGGRQVLNESE PVSGHDDSSFLVEYLKASVRMEMRIMNIGSRILRMMEMLMLAGKELPRKRKLLKGQRNQLRVKRSLVESARKPVTHQNSWSRSSQRRNFPIQLAEGKDIA RNDELLKVPEDEIEFRSLTMRDIIVLAEHKERLAAKDAKASLQIPSTDENTEEANDEEDNSESEEPVDVYETPLFNSHSFMNRTPTMRWSKPDTDLFYEG IRQFGSADKSRINSKLKSADIHSYFLTLCKTPTVVYNKLAQAAADEGREPLDLTGEKEADLNLETNEEPGKNSEQDEQATGQDPGDNPDEAHSNEKIEDE DEDDLFSSYKCEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10023544 [exp]	0	1
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10026620 [exp]	6.5	0.6918
					Lus10008923 [exp]	7.3	0.7058
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	9.1	0.7257
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	12.6	0.7148
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	17.9	0.6168
AT5G39020			Malectin/receptor-like protein...		Lus10008333 [exp]	19.7	0.6950
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	23.4	0.6991
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	24.0	0.6932
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	27.6	0.6863
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	27.8	0.6471

Compare expression of checked genes

Lus10023544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.