Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36310 400 / 2e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040430 [exp] 543 / 0 AT1G36310 443 / 3e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091300 [exp] 413 / 9e-144 AT1G36310 431 / 1e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10023545 pacid=23160620 polypeptide=Lus10023545 locus=Lus10023545.g ID=Lus10023545.BGIv1.0 annot-version=v1.0 ATGAAGGAAATCAAGGTGACTGGCTCTGCTGCCAGCTTCTGCTCCAATGCTGAAGATCACCAGGCAGCTTCATGTATCGGCTCGACCCCGGAGATTGAAA AGAAGTATGTGCATCGAGTTTACGACGCGATAGCGCCTCATTTCAGCTCCACGAGGTTCGCTAAATGGCCAAAGGTAGCGTCTTTCCTAAACAATTTGCC AGTAGGATCGCTCGTGCTCGATGCAGGATGTGGGAACGGGAAGTATCTAGGGCTGAATCCGGATTGCTTTTTCATCGGGTGCGATATCAGCAGCCCGCTG ATCAAGATTTGTGCGGATCGAGGGAGCGAGGTTCTGGTTGCAGATGCTGTGAATCTTCCTTACCGAGACGGGTTTGGCGATGCTGCGATTTCGATTGCGG TGCTGCATCATTTGAGCACCGAGGTCAGGAGGAAGAAGGCGGTGGAGGAGTTGGTTAGGGTTGTGAAGAAGGGTGGACTTGTGTTGATAACTGTCTGGGC TGCCGAGCAAGAGGATCGGTCGCTGCTTACGAAGTGGACGCCTCTTAATGATAAGTATGTCGAGGAATGGATTGGACCGGGGAGTCCTCGTGTCCGGAGC CCTTCGTCCGTGACTTTGAAAAGCATCCCAGAATCCGCAGAAGGGAAGGAAATACTGCACGATGAGAGGCGGAGTCCCCCTTCGTCTGTTGCATTGAAAA GCATCCCGGAATCTGGTGATGCAGTGGTTTCGAGAGAGGATGGAAGTCAGCACGAGTATTTCGTGCCTTGGCATCTGCCGTATCATCGAGCTGAAGTTGG GGGCGCTTCTGCCTCTGCTGTGGCCTCCGGCTTGGCGAGGAAAGATGACAAGAAGGGTGCAGTCATCTACAACCGGTACTATCACGTCTTTAGCGAAGGA GAGCTCGAAAGGTTGACATCTGGAATCAAGAATGCAGTCATAGTCGATCAGTTCTTCGACAAATCGAATTGGTGCATCGTTCTCCAGAAAATCACGTGA
AA sequence Show only first row Show all	>Lus10023545 pacid=23160620 polypeptide=Lus10023545 locus=Lus10023545.g ID=Lus10023545.BGIv1.0 annot-version=v1.0 MKEIKVTGSAASFCSNAEDHQAASCIGSTPEIEKKYVHRVYDAIAPHFSSTRFAKWPKVASFLNNLPVGSLVLDAGCGNGKYLGLNPDCFFIGCDISSPL IKICADRGSEVLVADAVNLPYRDGFGDAAISIAVLHHLSTEVRRKKAVEELVRVVKKGGLVLITVWAAEQEDRSLLTKWTPLNDKYVEEWIGPGSPRVRS PSSVTLKSIPESAEGKEILHDERRSPPSSVALKSIPESGDAVVSREDGSQHEYFVPWHLPYHRAEVGGASASAVASGLARKDDKKGAVIYNRYYHVFSEG ELERLTSGIKNAVIVDQFFDKSNWCIVLQKIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	0	1
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	1.0	0.9419
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	1.7	0.9074
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	4.0	0.9010
AT2G31410			unknown protein		Lus10035165 [exp]	5.2	0.8694
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	8.1	0.8930
AT4G08230			glycine-rich protein (.1.2)		Lus10041619 [exp]	8.4	0.8977
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	9.2	0.8921
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	11.6	0.8614
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	12.0	0.8983
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	12.1	0.9112

Compare expression of checked genes

Lus10023545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.