Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 805 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 783 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 571 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 561 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 527 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G36490 522 / 2e-180 ATSFH12 SEC14-like 12 (.1) AT4G34580 511 / 5e-176 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 470 / 3e-160 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 459 / 7e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 434 / 7e-146 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040431 [exp] 1085 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 931 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 923 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025988 [exp] 516 / 3e-177 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 514 / 3e-176 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 504 / 6e-173 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10041779 [exp] 500 / 9e-172 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 498 / 1e-170 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10024276 [exp] 476 / 3e-161 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119500 [exp] 857 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 843 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 660 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 645 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 566 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 554 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 551 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G020300 [exp] 548 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.011G168300 [exp] 410 / 5e-136 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G243000 [exp] 407 / 4e-134 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10023546 pacid=23160535 polypeptide=Lus10023546 locus=Lus10023546.g ID=Lus10023546.BGIv1.0 annot-version=v1.0 ATGTCTGGTCCGCTCGATCGGTTCGCTAGGCCTTGTTTTGAGGGTTCATCAGGGGGAGATGAAAGGAGGGAGGAGAGGAGGGAGAGGAGATCTGATTTTG AGAACTCCGAGGACGAGAGAAGGACGAGGATTGGGTCGCTGAAGAAGAAGGCAATTAATGCTTCTACCAAGTTCAAGCATTCTCTGAAGAAGAAGAGCAG CACCAGGCGAAAGAGTGATGGCCGGGTTAGCTCAGTTTCCATCGAAGACATACGGGACCTCGAGGAACTGCAGGCTGTCGATGCATTTCGCCAGTCGTTG ATCATGGACGAGTTACTTCCTGAAAGACACGATGACTACTACATGATGTTGAGGTTCTTGAAAGCTAGGAAATTCGACCTTGAGAAAGCAAAGCATATGT GGGCTGATATGCTTCAATGGAGGAAGGAATTTGGTACTGATACTATCATGGAGGAGTTTGAGTTTCAAGAATTAGAGGAAGTTTTGAAGTATTACCCACA TTTCTATCATGGCGTGGACAAAGAAGGGAGACCTATTTACATTGAAAGATTGGGGAAAGTTGATCCTCACAAACTTATGCAAGTAACAGATCTCGACCGC TATGTGAAATACCATGTCCGTGAGTTTGAGAAAAGCTTTTTGGTCAAGTTTCCAGCTTGTAGCATTGCTGCAAGGAAGCATATTGACTCTAGCACAACAA TTCTAGATGTTCAAGGAGTGGGATTAAAAAACTTCACTAAATCTGCTCGGGAACTTGTCATGCGGCTGCAGAAGATTGATGGTGACAACTACCCCGAGAC TCTACACGAAATGTACATTATCAATGCTGGGCCTGGATTTAGGCTTTTGTGGGGTACCATCAAGACATTTTTGGATCCAAGAACCAGCTCCAAGATTCAT GTGCTTGGAAACAAGTATCAGAGTAAATTGCTCGAGGTAATCGATGCTAGTGAATTACCCGAATTCATGGGTGGTGTCTGTAAGTGTGCTGATCAGGGAG GTTGTCTTCGCTCTGACAAAGGACCATGGAGAAATCCAGATCTATTGAAGATTGTTCTAAGTGGAGGAGCTCGTCGCTCAAGGCAGGTTGTAAAGATCTT AAACAACGAGGGTAAGGTCATTACCTATGCAAAGCCTCCTTGTTACCCGATGGTCAGAAGTGATTCCTCTGCTGCTGAATCTGGATCAGAAGCTGAAGAG ATTTCTTCCCCCAAGGCACTAAGGTCTTACTCGCATCTGCGCCTGACTCCTGTTCGTGAAGAATCTAAGATTGTTGGGAAGGTGAATCACCCTAGCACCT TTTCTGGGTATGATGAATACGTTCCGATGGTCGATAAAGCAGTTGACTCTACCTGGAATGAGCAAGCAGCCATTCAGAAGCTTGCAATGTCTAAAGCTTC TACCACAGCATCTGCAACTGTTCCGGAGACTCCAAAGACGTCAGCTGCTATCCACGTTAGGCTTTATTTGGCAGTTCTGGCTTTCTTCATGACGATTCTT ACTTTCATCCGTGTGTTGCCATCGCGGTTGAGCAAAGAGGGTACTTCAGCCGGATTAACCTTAAACACTCCAGAGAAAGAGCTGACACACCCACCTTCGC CAACTCCAGCTTACTCGGAGACCGACCTGCTCACTACTGTACTGAAAAGGCTGGGTGAACTTGAGGAGAAAGTTGACACGCTTCAATCAAAGCCATCGGA GATGCCGTACGAGAAAGAGGAGTTGCTAAATGCTGCTGTTTGCCGTGTTGATGCCTTGGAAGCCGAACTCATTGCAACTAAAAAGGCCCTACACGAAGCA CTTATGAGACAGGAAGAACTGCTTGCTTACATCGATAGTCAAGAGGAAGCGAAAAACAGGGTATAA
AA sequence Show only first row Show all	>Lus10023546 pacid=23160535 polypeptide=Lus10023546 locus=Lus10023546.g ID=Lus10023546.BGIv1.0 annot-version=v1.0 MSGPLDRFARPCFEGSSGGDERREERRERRSDFENSEDERRTRIGSLKKKAINASTKFKHSLKKKSSTRRKSDGRVSSVSIEDIRDLEELQAVDAFRQSL IMDELLPERHDDYYMMLRFLKARKFDLEKAKHMWADMLQWRKEFGTDTIMEEFEFQELEEVLKYYPHFYHGVDKEGRPIYIERLGKVDPHKLMQVTDLDR YVKYHVREFEKSFLVKFPACSIAARKHIDSSTTILDVQGVGLKNFTKSARELVMRLQKIDGDNYPETLHEMYIINAGPGFRLLWGTIKTFLDPRTSSKIH VLGNKYQSKLLEVIDASELPEFMGGVCKCADQGGCLRSDKGPWRNPDLLKIVLSGGARRSRQVVKILNNEGKVITYAKPPCYPMVRSDSSAAESGSEAEE ISSPKALRSYSHLRLTPVREESKIVGKVNHPSTFSGYDEYVPMVDKAVDSTWNEQAAIQKLAMSKASTTASATVPETPKTSAAIHVRLYLAVLAFFMTIL TFIRVLPSRLSKEGTSAGLTLNTPEKELTHPPSPTPAYSETDLLTTVLKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEA LMRQEELLAYIDSQEEAKNRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	0	1
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10040431 [exp]	3.7	0.8887
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	5.7	0.8864
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	5.7	0.8924
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	7.3	0.8786
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	8.7	0.8802
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	10.0	0.8450
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10039385 [exp]	10.5	0.8483
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	11.3	0.8835
AT2G25790			Leucine-rich receptor-like pro...		Lus10006045 [exp]	14.3	0.8077
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	15.1	0.8529

Compare expression of checked genes

Lus10023546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.