Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21540 613 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 568 / 0 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 565 / 0 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 561 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 558 / 0 ATSFH12 SEC14-like 12 (.1) AT2G21520 493 / 1e-168 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 492 / 2e-168 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 484 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 471 / 2e-160 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 433 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040432 [exp] 1025 / 0 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10042303 [exp] 740 / 0 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10026355 [exp] 728 / 0 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 543 / 0 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 518 / 3e-179 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 509 / 1e-174 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 507 / 6e-174 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 505 / 2e-172 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 500 / 2e-171 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157600 [exp] 680 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.009G119400 [exp] 676 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 586 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 583 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 511 / 7e-176 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 490 / 1e-167 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 483 / 7e-165 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 468 / 2e-158 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 404 / 9e-134 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 374 / 3e-122 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10023547 pacid=23160558 polypeptide=Lus10023547 locus=Lus10023547.g ID=Lus10023547.BGIv1.0 annot-version=v1.0 ATGGCTGATGCAATGTCTATAGTCCTTCCGGACAAAAATCCTAAACTAGGAGGACCTGAGAATCAAGAGTTCTCAGAGGATGAGAAGAAGAAGCAGTCAT TCAAGAAGAAGGCAATCAATGCCTCCAACAAGTTCAGGAGCTCCCTGACAAAGAAAGGCCGCAGGAACAGCAGGGTAATGTCGGTCTCGATAGTCGACGA AATCAACGGGGAGGAGCTCAGGGCTGTGGATGCATTCAGGCAGGCACTCATCCTTGATGAGCTTCTTCCTTCAAACCATGATGATCATCACATGATGCTC AGGTTCCTCAAGGCCAGGAAGTTTGACATTGACAAGGCCAAACAGATGTGGGGGGATATGATCCAGTGGAGAAAGGAGTTTGGTACTGATTTAATCATGG AGGACTTTGAGTTCAAGGAAGTAGATGAAGTCCTGCAGTACTATCCACAAGGGTACCATGGAGTAGACAAAGATGGGAGGCCAGTCTACATCGAGAAGCT CGGCGAAGTTGATGCCAACAAGCTGGTTCAGGTCACATCGTTGGATCGATATGTGAAGTACCATGTTCAGGAGTTTGAGAAAGCTTTCACTTACAAGTTC CCATCTTGCTCCATTGCTGCTAAGAAGCACATCGACCAGAGCACCACCATCATTGATGTTCAAGGAGTGGGTCTGAAGCAGTTCACCAAAACTGCCAGGG AACTTATCAGCCGGATCCAGAAGATCGATGGCGATAACTATCCTGAGACATTGAACAGGATGTTCATCATCAATGGTGGGGCTGGATTCAGGTTACTGTG GAACACTGTGAAGCAGTTCCTGGACCCTAAGACTGCTTCCAAGATCCATGTTCTTGGCACCAAATATCAAAGCAAGTTGCTTGAAGTAATTGATGCCAGC GAGCTGCCATCGTTCTTCGGAGGGACTTGCAACTGTGATGACAAGGGTGGATGCATGCGCTCCAGCAAAGGTCCATGGAATGATCCTGACATCCTGAAGA TGGTTGAAAATGGTGAGGGTAAATGCCACAGGAGAATCCTGTCAGGAATTGAGGAGAAGCCAATTCCTGAAGACAAGGAAACCATCAAGGTTTTGAACGA CGAAGTACTTCAGGACCTGAAACCTTCTCCCGTTCCTGAAGAAGAAGTAATTCACCATCTTCCGATCATAACCGTGAACAGGCTCACCACTGAAAACTGC GAGAAGTCCATCCAAGTCGTGGAGAAGACCATCAACACTGACTGGAGAGCTTCTTCAGGAAAGGGTATGCAAGAGGATGCTCTTGTGCCAGCAAACGGGA AGCAGGTGATGGGTGGGATCATGGCGGTTGTGATGGGAGTAGTGACCTTGATCAAGATGACCAAGACAATGCCTCGAAAGCTGACCGAGGCAGCAATCTA CGGGAGCAAGACTTACTACTCCGAATCGCTCAACGACCATCCTTCTTCAGCTGGAAGGATGGAGGGATCGTCCATCTCCTCCTCGGATTACAAGAACATG ATGTTGAGGATGGCAGATATCGAGGAGAAGCTGAACGCCCTTTGCTCGAAACCCGAAGTGATGCCGGCTGAGAAGGAGGCAATGCTGATGAACGCACTCG ACCGCGCTGAAGCCCTCGAGAAGGAGCTCTCTGCTGCAAAGATTTTACTTGTGGAAGCTGTAGGGAAACAGCAAGAACTCCTGGCTTACATGGACAAGAA GAACAAGAAGAAGAAGAGGGCTTTCAGCCGTGTATAA
AA sequence Show only first row Show all	>Lus10023547 pacid=23160558 polypeptide=Lus10023547 locus=Lus10023547.g ID=Lus10023547.BGIv1.0 annot-version=v1.0 MADAMSIVLPDKNPKLGGPENQEFSEDEKKKQSFKKKAINASNKFRSSLTKKGRRNSRVMSVSIVDEINGEELRAVDAFRQALILDELLPSNHDDHHMML RFLKARKFDIDKAKQMWGDMIQWRKEFGTDLIMEDFEFKEVDEVLQYYPQGYHGVDKDGRPVYIEKLGEVDANKLVQVTSLDRYVKYHVQEFEKAFTYKF PSCSIAAKKHIDQSTTIIDVQGVGLKQFTKTARELISRIQKIDGDNYPETLNRMFIINGGAGFRLLWNTVKQFLDPKTASKIHVLGTKYQSKLLEVIDAS ELPSFFGGTCNCDDKGGCMRSSKGPWNDPDILKMVENGEGKCHRRILSGIEEKPIPEDKETIKVLNDEVLQDLKPSPVPEEEVIHHLPIITVNRLTTENC EKSIQVVEKTINTDWRASSGKGMQEDALVPANGKQVMGGIMAVVMGVVTLIKMTKTMPRKLTEAAIYGSKTYYSESLNDHPSSAGRMEGSSISSSDYKNM MLRMADIEEKLNALCSKPEVMPAEKEAMLMNALDRAEALEKELSAAKILLVEAVGKQQELLAYMDKKNKKKKRAFSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10023547 [exp]	0	1

Compare expression of checked genes

Lus10023547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.