Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11880 809 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT3G14390 801 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT4G34710 49 / 7e-06 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2) AT2G16500 47 / 2e-05 SPE1, ARGDC1, ADC1 arginine decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040433 [exp] 993 / 0 AT5G11880 813 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10042305 [exp] 863 / 0 AT5G11880 806 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10026354 [exp] 216 / 4e-69 AT5G11880 210 / 2e-67 Pyridoxal-dependent decarboxylase family protein (.1) Lus10004154 [exp] 49 / 4e-06 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1) Lus10031079 [exp] 44 / 0.0004 AT4G34710 1040 / 0.0 arginine decarboxylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119300 [exp] 835 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G157500 [exp] 822 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.005G246300 [exp] 61 / 7e-10 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1) Potri.002G015800 [exp] 53 / 2e-07 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G163300 [exp] 44 / 0.0002 AT4G34710 988 / 0.0 arginine decarboxylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Representative CDS sequence Show only first row Show all	>Lus10023548 pacid=23160476 polypeptide=Lus10023548 locus=Lus10023548.g ID=Lus10023548.BGIv1.0 annot-version=v1.0 ATGGCGTCTTGTACCCACTTCTCCCAGCCGTTAGCTTCATCAAGAACCCTAACTCAATCCCGCGCTCGAAACCTATATTCAAAAGCCTTTTCTTTATCCA CTCCAAATTACTCTTCCAGACAATCCTTAGCTCTTCGTGCAGTTCTCTCGCAAAACCCTACCAAAACCTCTCCTCCACCGAAACTCGACAACCAATTCGA GCATTGTTTCTCCAAATTATCCGATGGATTTCTCTACTGCGAGAGCGTCAAGGTCCAGGATGTCATGGACACTGTTGAGAGGCGGCCGTTCTACCTGTAC AGCAAGCCTCAGATCACTAGGAATGTTGAGGCCTACAAGGATGCTTTGGAAGGATTGAATTCAGTAATTGGATATGCTATCAAGGCTAATAATAACTTGA AGATTTTGGAGCATTTGAGGAAGTTGGGATGTGGGGCTGTTCTGGTCAGTGGGAATGAGCTCAGATTGGCTCTCAAGGCTGGGTTTGATCCCACAAAGTG TATATTTAATGGAAATGGGAAGCTGTTGGAGGATTTGGTTCTGGCTGCTGAAGCAGGTGTCTTTGTTAATGTGGATAGTGAATTTGATTTAGAAAATATT GTGGCAGCTTCTAGGGTTGCTGGCAAGAAGGTTAATGTTTTGCTTCGGATCAATCCTGATGTGGATCCTCAGGTCCACCCTTATGTAGCTACCGGGAACA AGAACTCAAAGTTTGGTATTAGAAATGAGAAGCTGCAATGGTTTCTGGATGCTGTAAGGGCACATCCGAATGAGCTGAAGCTTGTTGGTGCCCACTGCCA TCTCGGATCAACGATTACCAAGGTGGACATATTTAGGGATGCTGCTGGTCTTATGGTACACTATATCGACGAAATACGTGCGCAAGGCTTTGAAGTTGAT TACTTAAACATTGGAGGTGGTTTGGGGATAGATTACCATCACTCCGGTGCTGTTCTGCCCAAGCCAAGGGATCTCATTGACACTGTTCGTGAAGTGGTGC TCTCTCGGAATCTCAATCTCATTATCGAACCAGGGAGATCCCTCATCGCCAACACCTGCTGCTTCGTAAATAGGGTTACTGGCGTAAAGACAAATGGCAC GAAAAATTTCGTCGTGATTGATGGTAGCATGGCTGAGCTCATCCGTCCTAGTCTATATGATGCTTATCAACACATAGAGCTAGTTTCTCCTACGCCACCA GATGCTGAGGTGTCAACCTTCGACATTGTTGGTCCTGTGTGCGAGTCGGCTGACTTTCTGGGAAAGGAGAGGGAACTTCCTACTCCACCCAAGGGAACCG GTCTGGTGGTTCATGATGCTGGAGCTTACTGCATGAGCATGGCATCAACTTACAACCTCAAGATGCGCCCTCCCGAGTATTGGGTTGAGGATGATGGGTC AATAGCCAAGATTCGACATGCAGAGACATTCGAAGACCATATCCGGTTCTTCAATGGGCTGTAA
AA sequence Show only first row Show all	>Lus10023548 pacid=23160476 polypeptide=Lus10023548 locus=Lus10023548.g ID=Lus10023548.BGIv1.0 annot-version=v1.0 MASCTHFSQPLASSRTLTQSRARNLYSKAFSLSTPNYSSRQSLALRAVLSQNPTKTSPPPKLDNQFEHCFSKLSDGFLYCESVKVQDVMDTVERRPFYLY SKPQITRNVEAYKDALEGLNSVIGYAIKANNNLKILEHLRKLGCGAVLVSGNELRLALKAGFDPTKCIFNGNGKLLEDLVLAAEAGVFVNVDSEFDLENI VAASRVAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVRAHPNELKLVGAHCHLGSTITKVDIFRDAAGLMVHYIDEIRAQGFEVD YLNIGGGLGIDYHHSGAVLPKPRDLIDTVREVVLSRNLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPTPP DAEVSTFDIVGPVCESADFLGKERELPTPPKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSIAKIRHAETFEDHIRFFNGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	0	1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	3.0	0.8988
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	3.5	0.9339
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	4.7	0.8696
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	5.5	0.8947
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	8.9	0.8781
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	10.0	0.9021
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	12.3	0.8871
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	13.1	0.8958
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	13.1	0.8568
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	14.3	0.8618

Compare expression of checked genes

Lus10023548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.