Plant FIBer expression Database

Lus10023549 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16370 133 / 5e-38 THY-1 thymidylate synthase 1 (.1)
AT4G34570 131 / 3e-37 THY-2 thymidylate synthase 2 (.1)
AT2G21550 107 / 1e-28 Bifunctional dihydrofolate reductase/thymidylate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040434
[exp]
170 / 1e-51 AT2G16370 799 / 0.0 thymidylate synthase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G157400
[exp]
154 / 1e-45 AT2G16370 870 / 0.0 thymidylate synthase 1 (.1)
Potri.009G119200
[exp]
150 / 3e-44 AT2G16370 845 / 0.0 thymidylate synthase 1 (.1)
Potri.005G230400
[exp]
127 / 1e-37 AT2G16370 303 / 2e-100 thymidylate synthase 1 (.1)
Potri.005G230700
[exp]
127 / 3e-37 AT2G16370 299 / 8e-99 thymidylate synthase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0387 DHFred PF00186 DHFR_1 Dihydrofolate reductase
Representative CDS sequence
>Lus10023549 pacid=23160636 polypeptide=Lus10023549 locus=Lus10023549.g ID=Lus10023549.BGIv1.0 annot-version=v1.0
ATGGCGAGTTCTGTAGCCAGCCTTTCCAATGGCGGTGTTGGTGGACAGCCAGATCCACAGAGGACTTACCAGGTTGTCGTGGCTGCAACTAAAGATTGGG
GTATCGGGAAAGATGGGAAGTTGTCTTGGAAGCTGCCTTCTGATCTCAAGTTCTTTAAAGATGTTTCCTTGACGACTTCCGATTCCGGGAAGAAGAATGC
AGTGGTCATGGGTAGGAAAACATGGGAGAGCATCCCACTTCAGCACCGTCCTCTCCCTGGACGTCTGAACTTGTTCTCACTCGATCGGGGAGCTTCAATA
TCGCTACTGCGGAGAATGTTGTGA
AA sequence
>Lus10023549 pacid=23160636 polypeptide=Lus10023549 locus=Lus10023549.g ID=Lus10023549.BGIv1.0 annot-version=v1.0
MASSVASLSNGGVGGQPDPQRTYQVVVAATKDWGIGKDGKLSWKLPSDLKFFKDVSLTTSDSGKKNAVVMGRKTWESIPLQHRPLPGRLNLFSLDRGASI
SLLRRML

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16370 THY-1 thymidylate synthase 1 (.1) Lus10023549
[exp]
0 1
AT2G45770 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFEC... Lus10003676
[exp]
2.0 0.8066
AT3G07610 IBM1 increase in bonsai methylation... Lus10002051
[exp]
6.3 0.7993
AT5G64320 Pentatricopeptide repeat (PPR)... Lus10039056
[exp]
6.6 0.7651
AT5G10710 unknown protein Lus10026943
[exp]
7.6 0.7212
AT1G77800 PHD finger family protein (.1.... Lus10024778
[exp]
8.5 0.7784
AT3G23590 MED33A, RFR1 REF4-related 1 (.1) Lus10041229
[exp]
8.7 0.8170
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Lus10022174
[exp]
18.9 0.7780
AT3G54460 SNF2 domain-containing protein... Lus10039526
[exp]
19.7 0.7841
AT4G27340 Met-10+ like family protein (.... Lus10037871
[exp]
21.2 0.7563
AT3G54980 Pentatricopeptide repeat (PPR)... Lus10019524
[exp]
22.1 0.8063

Lus10023549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.