Plant FIBer expression Database

Lus10023550 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34570 182 / 2e-55 THY-2 thymidylate synthase 2 (.1)
AT2G16370 177 / 5e-54 THY-1 thymidylate synthase 1 (.1)
AT2G21550 121 / 3e-33 Bifunctional dihydrofolate reductase/thymidylate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040434
[exp]
204 / 7e-64 AT2G16370 799 / 0.0 thymidylate synthase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G157400
[exp]
190 / 1e-58 AT2G16370 870 / 0.0 thymidylate synthase 1 (.1)
Potri.009G119200
[exp]
182 / 8e-56 AT2G16370 845 / 0.0 thymidylate synthase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00303 Thymidylat_synt Thymidylate synthase
Representative CDS sequence
>Lus10023550 pacid=23160521 polypeptide=Lus10023550 locus=Lus10023550.g ID=Lus10023550.BGIv1.0 annot-version=v1.0
ATGGTACAGGAGATCTTGTCAAGTGGCAACTCTAAGGATGACAGGACGCAAACTGGTACTTTGTTTAAATTTGGTTGCCAGATGCGGTTCAATCTTCGGA
AATCCTTTCCTCTTCTGACGACTAAGTTTTACGCGGCGAACGGGGAGCTGTCGTGCCAAATGTATCAGCGGTCCGCTGATATGGGCCTTGGTGTGCCTTT
CAACATTGCTTCTTATGCACTCCTGACTTGCATGATTGCTCATGTTTGTGATTTTGTCCCTGGAGATTTCGCTCACGTATATCTTACTCATGTTGGGCCT
CTGGAGGAGCAGCGTAAGAAATCACCGAATACTTTCCCGATTTTAAAGATTAATCCAGAGAAGAAAGACATAGATTCCTTTTCAGCAGCAGATTTCAAGC
TCATAGGCTATGACCCCGAACAGAAGATCGAAATGAAGATGGCAGTTTAA
AA sequence
>Lus10023550 pacid=23160521 polypeptide=Lus10023550 locus=Lus10023550.g ID=Lus10023550.BGIv1.0 annot-version=v1.0
MVQEILSSGNSKDDRTQTGTLFKFGCQMRFNLRKSFPLLTTKFYAANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDFVPGDFAHVYLTHVGP
LEEQRKKSPNTFPILKINPEKKDIDSFSAADFKLIGYDPEQKIEMKMAV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34570 THY-2 thymidylate synthase 2 (.1) Lus10023550
[exp]
0 1
Lus10011007
[exp]
15.6 0.7905
AT3G28455 CLE25 CLAVATA3/ESR-RELATED 25 (.1) Lus10005836
[exp]
17.0 0.7079
AT4G08170 Inositol 1,3,4-trisphosphate 5... Lus10037247
[exp]
21.3 0.7641
AT3G44600 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 ... Lus10006271
[exp]
25.7 0.7645
AT2G43370 RNA-binding (RRM/RBD/RNP motif... Lus10027015
[exp]
29.5 0.7583
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Lus10006516
[exp]
32.3 0.7379
AT3G01330 E2F_DP E2FF, E2L2, DEL... E2F-LIKE 2, DP-E2F-like protei... Lus10039455
[exp]
37.2 0.7193
AT5G06780 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (... Lus10021038
[exp]
44.8 0.7342
AT2G37290 Ypt/Rab-GAP domain of gyp1p su... Lus10014020
[exp]
58.9 0.6902
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Lus10007172
[exp]
62.2 0.6609

Lus10023550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.