Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34560 59 / 1e-10 unknown protein AT5G66440 53 / 3e-08 unknown protein AT2G21560 44 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040435 [exp] 327 / 2e-114 AT5G66440 104 / 3e-27 unknown protein Lus10042306 [exp] 140 / 6e-41 AT5G66440 97 / 2e-24 unknown protein Lus10026353 [exp] 130 / 4e-37 AT4G34560 101 / 2e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157300 [exp] 124 / 1e-34 AT4G34560 107 / 9e-29 unknown protein Potri.009G119000 [exp] 110 / 2e-29 AT4G34560 90 / 8e-22 unknown protein Potri.005G120300 [exp] 53 / 4e-08 AT5G66440 134 / 4e-38 unknown protein Potri.007G021500 [exp] 43 / 0.0001 AT5G66440 147 / 6e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10023551 pacid=23160511 polypeptide=Lus10023551 locus=Lus10023551.g ID=Lus10023551.BGIv1.0 annot-version=v1.0 ATGGATTCGTTCACGGTCAGGGCAGTGAAGGCGATGAAGAAGCAGAGGAAGATCCAGAACGTCACAAACATGCTGAGACTGGTGGAAATCCTGGTAGTCC TGGCGGTTCTATCCCGGGTTTCGGTCCAGCTCCCGGTCTCCCTCAAGGGTTCTGGCGACTACATCAAGGACTTTCTGCTCGTCCTCATCAGCCCCCGGTT CGTGTTCATCGTCGGGAACGTGATCGTCGTCGTCCTCTTCGTCAAGTCCGGCCACCTTCGGGGGAGCACCGGGAAAAAATCCGATCTTTATGAACAGTTC GTCGAAATGAGTGGGAAAAGCAGTAGTACTGCTCAGGAAAACAGAGGAAAACAGAGTGAGAAATTGGAAGCCGTTGTTAGAGTTTCAGAAAACAGAGTAA AACCGAGTGATAAACTGGAAGCCACTGTCAAGGAAGAAAGCTCTGTTTCTGGTTCGGCGATGATCGTCAAGAGCTACGAGAGGAGTCGGTCCGAGAATCT GACGAGTTATCACAAGCCCGAGAAGGAATTGAGGCGATCTGCAACTGAGAATTTGACAAAGAAGAAGCAGAAGAACAAGGGTGGTGATAAGTTTCCTGAG GATAATTTGACCAGTGAGGAGTTCAAGAGTACGATCGAGGCGTTCATCGAGAGGCAGAAGAGGTTCCGACGAGACGAGGAGAACTCTGTAATTGTGTGA
AA sequence Show only first row Show all	>Lus10023551 pacid=23160511 polypeptide=Lus10023551 locus=Lus10023551.g ID=Lus10023551.BGIv1.0 annot-version=v1.0 MDSFTVRAVKAMKKQRKIQNVTNMLRLVEILVVLAVLSRVSVQLPVSLKGSGDYIKDFLLVLISPRFVFIVGNVIVVVLFVKSGHLRGSTGKKSDLYEQF VEMSGKSSSTAQENRGKQSEKLEAVVRVSENRVKPSDKLEATVKEESSVSGSAMIVKSYERSRSENLTSYHKPEKELRRSATENLTKKKQKNKGGDKFPE DNLTSEEFKSTIEAFIERQKRFRRDEENSVIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66440			unknown protein		Lus10023551 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	1.0	0.9251
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	4.2	0.8992
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	4.5	0.9025
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	4.6	0.8463
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	5.3	0.8657
					Lus10003607 [exp]	5.7	0.8633
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	8.5	0.8898
AT1G67790			unknown protein		Lus10034566 [exp]	9.6	0.8990
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	9.9	0.8791
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	11.0	0.8913

Compare expression of checked genes

Lus10023551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.