Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39210 729 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 699 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT1G27680 696 / 0 APL2 ADPGLC-PPase large subunit (.1) AT5G19220 649 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT5G48300 484 / 2e-167 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 331 / 2e-108 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040437 [exp] 958 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10007209 [exp] 650 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10034053 [exp] 649 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 635 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010088 [exp] 632 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10025187 [exp] 479 / 9e-166 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 479 / 1e-165 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 314 / 2e-101 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 280 / 1e-88 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118800 [exp] 806 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.004G157100 [exp] 806 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.002G033400 [exp] 714 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 710 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 673 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.008G195100 [exp] 644 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G171800 [exp] 480 / 4e-166 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.017G001700 [exp] 353 / 3e-116 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.007G146100 [exp] 351 / 5e-116 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10023553 pacid=23160550 polypeptide=Lus10023553 locus=Lus10023553.g ID=Lus10023553.BGIv1.0 annot-version=v1.0 ATGGGTTCCTGCTGCGTGGCGTTGGAAGCCAGTAACCTTCTGGTGAACAGAGAGCTGAGGATTTCACACTCGCCGAATGATCCTTTCACTCGGTTGAAGT TTGAGAAGAAGCAGAAGAAGAGCATCAATAAGTCGAAATCTCGTTTAGTCTCTTCAGTCTTGACTTCCAGTAATGGCAGAGGAACTGTGACCTTACAACC AGAGCCAAGGCCAGATAGGAACAGAGTGGATCCAAAAGATGTGGCTTCCATAATACTGGGAGGAGGTTCTGGTGCTCAGCTGTTTCCTCTAACCAAAAGG ACTGCAACTCCAGCTGTACCAATAGGAGGATGCTACAGGCTGATTGATGTGCCTATGAGCAACTGCATCAACAGTGGGATCAACAAGATCTTCGTCCTTA CCCAGTTCAACTCGACATCCCTCAATAGACACATAGCTCGCGCCTACTTTGGCAACGGCATCAACTTCGGAGACGGATTTGTTGAGGTTCTGGCCGCCAC TCAAACCGCCGGACAAGCAGGAATGAAGTGGTTCCAAGGAACTGCAGATGCTGTCAGGCAATTTACATGGGTGTTTGAGGATGCCAAGACCAGGAACGTA GAGAACATCATAATCTTGTGCGGCGATCACCTTTACCGTATGGATTACATGGACTTCGTTCAGCACCATGTTGATAGCAATGCGGATATCACCATTTCGT GTGCTGCTGTGGGCGAAAGCCGTGCATCAGATTACGGATTGGTCAAGTTAGACAGCAAAGGTAGAATTATCCAGTTTGCTGAGAAACCAAAGGGTGCTGA CCTAAAATCAATGCAAGTGGATACGACTCGGATAGGTTTGACTCCGCAGAAAGCGAAGCAGTCGCCATTTATCGCTTCGATGGGAGTTTACGTGTTTAAA ACCGACATGCTGTTGAAGCTCCTGAAGTGGAGGTTTCCTACAGCAAATGACTTTGGCTCTGAGATCATCCCTGCAGCAGTTATGGAGCATGATGTCAATG CATACATCTTTCGAGACTACTGGGACGATATTGGAACGATCGATTCGTTCTACCAAGCTAACTTAGCTCTCACCGAAGAGCCTCCAATGTTTGAGTTTTA CGACCCTCAAAAACCGATTTACACATCTCCAACGTTCTTGCCGCCAACCAAGATCGATCAATCTCGGATTGTAGATGCAATAATCTCCCACGGTTGTTTC TTGAGAGATTGTTCTGTCCAGCATTCGGTTATTGGTGAGCGATCTTGTCTGGATTCTGGTGTTGAGCTAGCGGATACTGTGATGTTAGGAGCAGATTACT ATCAAACCGAAGCTGAAATAGCATCTCTTCTGGCAGATGGAGGAGTCCCAATTGGCATAGGGAAGAACACCAAAATCAGGAAGTGCATTATCGATAAGAA CGCGAAGATAGGGAAAGACGTGATGATCGTCAACAAAGATGGTGTAGAAGAAGCTGACAGGCCAGAACTAGGGTTCTACATTCGAAAAGGGATCACCATT GTAGCAGAGAAGGCGACAATCGAAGATAGAACTGTCATATAA
AA sequence Show only first row Show all	>Lus10023553 pacid=23160550 polypeptide=Lus10023553 locus=Lus10023553.g ID=Lus10023553.BGIv1.0 annot-version=v1.0 MGSCCVALEASNLLVNRELRISHSPNDPFTRLKFEKKQKKSINKSKSRLVSSVLTSSNGRGTVTLQPEPRPDRNRVDPKDVASIILGGGSGAQLFPLTKR TATPAVPIGGCYRLIDVPMSNCINSGINKIFVLTQFNSTSLNRHIARAYFGNGINFGDGFVEVLAATQTAGQAGMKWFQGTADAVRQFTWVFEDAKTRNV ENIIILCGDHLYRMDYMDFVQHHVDSNADITISCAAVGESRASDYGLVKLDSKGRIIQFAEKPKGADLKSMQVDTTRIGLTPQKAKQSPFIASMGVYVFK TDMLLKLLKWRFPTANDFGSEIIPAAVMEHDVNAYIFRDYWDDIGTIDSFYQANLALTEEPPMFEFYDPQKPIYTSPTFLPPTKIDQSRIVDAIISHGCF LRDCSVQHSVIGERSCLDSGVELADTVMLGADYYQTEAEIASLLADGGVPIGIGKNTKIRKCIIDKNAKIGKDVMIVNKDGVEEADRPELGFYIRKGITI VAEKATIEDRTVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10023553 [exp]	0	1
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	1.7	0.8922
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	8.5	0.8872
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10040437 [exp]	8.5	0.8304
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	9.8	0.8861
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	11.0	0.8637
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	11.7	0.8778
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	12.4	0.8637
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	13.0	0.8613
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	14.0	0.8748
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	14.9	0.8643

Compare expression of checked genes

Lus10023553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.