Plant FIBer expression Database

Lus10023554 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16365 132 / 7e-33 F-box family protein (.1.2.3.4)
AT4G34550 67 / 5e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040438
[exp]
1245 / 0 AT2G16365 128 / 2e-31 F-box family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G157000
[exp]
301 / 2e-92 AT2G16365 105 / 7e-24 F-box family protein (.1.2.3.4)
Potri.009G118651
[exp]
292 / 9e-89 AT2G16365 108 / 5e-25 F-box family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10023554 pacid=23160642 polypeptide=Lus10023554 locus=Lus10023554.g ID=Lus10023554.BGIv1.0 annot-version=v1.0
ATGTCGAACGGGAAGGATGAGATGTCTGGAAGTGGTGGGTCTCAGTCTTCATGGATTGGTCATTGGTTGGGTAGGAATTGTAGGGTGGGAAATGAAGCAG
CAGCAACTTCAGTGACTAATGAGGTGAGTGAAGAGATTCATCATGGAGTGAAGTATCACCGTCTATTTGATCTTTCTGGGAAAGGATCCGAGGGTGGAGA
CCGGTATCGAGATGTGGGGAAGCGGAAGATGGCAGATTTTGTGTGTGGGAGTAGTACGAGTACGAGGGACGGGTTGGAGAGGTTAAGGAACGAGCCGTCT
GAAGGTCAGCCTTATCTCATGCTAGGTGTTTCGCTGGACGAGGAGATTGCTTTGCCTCCAGTGAAAAAGAGAGTTGATATTTCTCGGTTGGATGCTTCTT
CGAGTAGAGTTGAGAGCCACTTGCCTGGTTCTGCTGCATTGGTTGGTAACAGCGAAATGGGAACTCCACTTCTACCTCAGAGGAATGGGGTCGGTGTTTT
TCCTTCACGAGGCTACCTTTCGGGTGCCAGTCCTCAGGTTGTTCCATATGAATTTGACAGCAGGAGGAATAGAGTGCAATGTGCTTCCCGTGTAGAAGAC
AATTCGAATCAAGCGGGAAATTCATCTTGGGATCGCTCGAACAAGATCAGTTTCGGTGGAGCTCTTTCGGTGCATGACTCTTCAACCAGCAAGAATGAAT
CAAGAGGCTTTGCTGCTGAGATGATGCCTCTTCCGGATCATTTTCCCTTCCAGAGTGGCCCTACCGAAGAGGCATTTCGTAGCTCTCACAGTATAACAGG
AATGCCCTCTTCTTCTGCACACGGTGTGCAGGCTATGAGAATACGTACAACTGTCGATTCCATCACAGAATTTCCTGCCGGTTGTGCAAAGGTTTCACAT
ACAACTCACCACTTTTTCATCACAAAGAAGACTGATATGGATGAAGGTCAGATGTTCCAACAGTCGTCAGTATCCACAAAGTTCAAAGGAAAATCGTTAT
GTGAATTGTTCGGTTTAAAACCTGATGATCACTCTCGTAATAACCAAGGAGTGAAGCTGCAACAACTTGACAGTTCCGCAGAATGCGAGGGCAAAGAAGA
CACTGAAACTATCAAGAGTTTCCTACATGATTCAAAGAACGGATCATCCTCCGAGACCAACACTATGGACATCGATGCTGCCAGACATAACCAACTTCTT
GGTTTGGCTTCACGTCCATCAAGTAAGGTAAATTTACCATCACCTATATCTCAAGATCTAATCGCTTCAGTCGGCCAAGAAGTTACGGGTAGAATGGTGA
AAAAGCTGTTACCCGATATAAACAAAGAGGTTTGTCTACATCCTGATGTATCTGGGACAGCAGATGATAAGGAGACGAGCACGTCAATAACACAAAGTCT
GGATGTGGAATGCTTGCTCACTCATCCTGGAAACTCCAGAAATCTGAAGTCAAGGGCTTGTCCCGACCCTGTCAGGCTCGATCCATGTAGTAGATGGGTA
AGACGTCTCAAGCCAAGTGCTCCAGCACTCTTGCCCTACACCTACGGTTCTAAAGGTTCAGACTTAGGGGAAGCCTCTCATGGAAAAGTGAATGGAGTCT
TCACCAAAATGATAAGTGATCCCATTGGAAATGATCTTCCGGGATTTGATTGCCCTACTACAGTATTGTCAGAAAGGAATGCTGAATCTACTTCCACCGA
TTCTGAGGAGAAAGCTCATGACGTCGTCGAAGCCCACTCGCATCCTTGGATTCGACGATGGTCTCGTAACCCAGTTGCTTCTTCCCTGAGAAGGAAAGCT
GATTGTGTGATGGCTAGCGAATCTCGAGTCGGAAAGGGAACATCAGGTGAAGTACCGGAGAAGCAGTTTCCGAGTATAGCTGCTATGGCACTCATGGGAA
AGGCCATGACTGGTTTTCAACCTTGTGAGTTCAGGAAAAGGGGATGTCTTATAGTTTGGAGTACCAAGGGCTATTGA
AA sequence
>Lus10023554 pacid=23160642 polypeptide=Lus10023554 locus=Lus10023554.g ID=Lus10023554.BGIv1.0 annot-version=v1.0
MSNGKDEMSGSGGSQSSWIGHWLGRNCRVGNEAAATSVTNEVSEEIHHGVKYHRLFDLSGKGSEGGDRYRDVGKRKMADFVCGSSTSTRDGLERLRNEPS
EGQPYLMLGVSLDEEIALPPVKKRVDISRLDASSSRVESHLPGSAALVGNSEMGTPLLPQRNGVGVFPSRGYLSGASPQVVPYEFDSRRNRVQCASRVED
NSNQAGNSSWDRSNKISFGGALSVHDSSTSKNESRGFAAEMMPLPDHFPFQSGPTEEAFRSSHSITGMPSSSAHGVQAMRIRTTVDSITEFPAGCAKVSH
TTHHFFITKKTDMDEGQMFQQSSVSTKFKGKSLCELFGLKPDDHSRNNQGVKLQQLDSSAECEGKEDTETIKSFLHDSKNGSSSETNTMDIDAARHNQLL
GLASRPSSKVNLPSPISQDLIASVGQEVTGRMVKKLLPDINKEVCLHPDVSGTADDKETSTSITQSLDVECLLTHPGNSRNLKSRACPDPVRLDPCSRWV
RRLKPSAPALLPYTYGSKGSDLGEASHGKVNGVFTKMISDPIGNDLPGFDCPTTVLSERNAESTSTDSEEKAHDVVEAHSHPWIRRWSRNPVASSLRRKA
DCVMASESRVGKGTSGEVPEKQFPSIAAMALMGKAMTGFQPCEFRKRGCLIVWSTKGY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16365 F-box family protein (.1.2.3.4... Lus10023554
[exp]
0 1
AT3G14470 NB-ARC domain-containing disea... Lus10039540
[exp]
3.2 0.8425
AT3G02050 ATKT4, ATKUP3, ... K+ uptake transporter 3, ARABI... Lus10024709
[exp]
4.9 0.8367
AT3G52250 MYB Duplicated homeodomain-like su... Lus10036515
[exp]
5.4 0.8746
AT4G37100 Pyridoxal phosphate (PLP)-depe... Lus10000751
[exp]
5.7 0.8269
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Lus10039457
[exp]
7.3 0.8424
AT1G69360 Plant protein of unknown funct... Lus10037122
[exp]
8.7 0.8338
AT5G36210 alpha/beta-Hydrolases superfam... Lus10021758
[exp]
11.0 0.8181
AT2G20050 protein serine/threonine phosp... Lus10012976
[exp]
11.2 0.8250
AT5G04670 Enhancer of polycomb-like tran... Lus10008985
[exp]
14.0 0.8294
AT3G12010 unknown protein Lus10017227
[exp]
14.1 0.8307

Lus10023554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.