Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25730 785 / 0 FtsJ-like methyltransferase family protein (.1) AT5G01230 133 / 3e-34 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G13830 71 / 2e-13 FtsJ-like methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040439 [exp] 1241 / 0 AT4G25730 938 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10017186 [exp] 132 / 8e-34 AT5G01230 589 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021124 [exp] 117 / 1e-28 AT5G01230 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040283 [exp] 78 / 1e-15 AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) Lus10023402 [exp] 69 / 2e-12 AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118400 [exp] 899 / 0 AT4G25730 840 / 0.0 FtsJ-like methyltransferase family protein (.1) Potri.019G056300 [exp] 134 / 1e-34 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G202200 [exp] 84 / 1e-17 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase CL0063 [flax] [poplar] PF07780 [flax] [poplar] Spb1_C Spb1 C-terminal domain CL0063 [flax] [poplar] PF11861 [flax] [poplar] DUF3381 Domain of unknown function (DUF3381)
Representative CDS sequence Show only first row Show all	>Lus10023555 pacid=23160540 polypeptide=Lus10023555 locus=Lus10023555.g ID=Lus10023555.BGIv1.0 annot-version=v1.0 ATGGGTAAGGTGAAAGGTAAGCATCGTTTGGACAAGTACTACCACCTCGCCAAGGAGCACGGCTACCGTTCCCGTGCCTCGTGGAAGCTCGTCCAGCTCG ATTCCAAGTTCAAGTTCCTCCACTCTTCCCGCGCCGTCCTCGATCTCTGCGCCGCCCCCGGAGGATGGATGCAGGTCGCCGTCGAGAAGGTCCCCGTTGG GAGTCTGGTGCTAGGTATCGATTTGGTGAGGATCGCTCCTCTCCGTGGCGCGTTATCGATCGAGCAGGATATTACCAAGTCCGAGTGCAGGTCGAAGATT AAAAAGATTATGGGGGATAATGGGGTGAAGGCGTTTGATTTGGTTCTTCACGATGGTTCTCCCAATGTCGGCGGTGCTTGGACGCAGGAGGCCATGTCGC AGAATGCTTTGGTTATCGATGCACTGAAGTTGGCTACACAAGTGTTGGCTCCCAAGGGGAATTTCATCACTAAAGTGTTCAGGTCACAAGATTACAGTGC GGTTATCTACTGTTTAAATCAGTTCTTTGAGAAGGTTGAGGTTGATAAACCATTAGCCAGTCGTTCAGCGTCTGCAGAAATATTTGTGCTGGGGCTTAAG TACAAAGCACCTGCAAAGATTGACAATGACCTGCTCGATATTAGGAAGCTGTTTGCGCATGTTGATACACAAAGAAAGCCTCTAGATCCCCTCAGAGGAA CAAAGCAAAAACGTCATCGTGACGGTTATGAAGACGGACAGTCTATGATCCGGAAAGTCTCATCAGCTGCAGATTTTATCTGGTCCAACACCCCTCTTGA TGTCCTTGGCTCAGTTACTTCAATCACCTTTGAGGACCCTGTATCCTTGCCGATAAAGGATCATGAGTTGACAACGGAAGAGGTCAAAGCCCTTTGTGAG GATCTTCCTGTGTTGGGGAAGCAAGATTTCAAGCATCTTCTCAAATGGCGGATGAATTTAAGGAAGGCGCTGTCCCCTTCTGAAAAAGCTAGCTCTGCTG CTGCTGCTGACAGTGAGGAAAAGAAAGAATTAGATGAAGACGATAAGATGCTTAATGAAATGGAGGAGTTAACAAAGGCTATGGAGCGGAAGAAGAAAAG AGAGAAGAAAATATCTGCTAAAAGACGGGAAAAGGACAAGGCCCGGAAAGCATCTGGAGGAATGCCAATGGATGTACATGAAGATGGTGGCTACACTGAT ATCGAGTTATTTTCTCTTGCATCAATTAAGGGAAAGAACGATTTGGTTGCTATAGATAATGATGAGAATGGTGACGCGAGGGATAGTGACGAGGAGGAAA ACCCTGACAATGATGCTCGGGAGTCATCTGCCGATTCAGATTCGGATGCAGAGCGTCAAAAATATGATGCTACAATGGAGGACTTCCTCGACAATCTCTA TGAACGGTTTGTAACCAAAAAGGAAGGAAGTACAAAGCAGAGGAAACGTGCAAGGCAAGCCTACTCCGAGCAGCTCTTGGATGGGGAGAACGACAATATG GAGCACTCAGATTATGATTCGGACAGGGAGCCGGCCGATCGCGAAGCAAATCCTCTCATGATTCCACTCAACGACGGCGAAGAACCGACAAAAGAAGAAA TTGCAAACAAATGGTTCGCTCAGGAAATATTCACCAAAGCTGCCGAGGAAGAGGATCTGGTCATGTCTGACAGCGAGCAAGAGGATGCCCCCGCGACGGA GGCCGCTGTGATGGAGGTAGATAAGAAGCAGCAAGAGAAACGGGTTGCTCCCAAGAAGGCTGCGGTAAAAACTAGTGAACCCGATTTTGAGATTGTTCCT GCCCCTGAAACTGATTCTTCTGATTCGTCCTCGGACGAATCAGAAGACGACAGCATCGAGAAGAAGGCCGAGATACTGGCGTGTGCGAAGAAGATGCTGA GAAAGAAACAAAGAGAGCAAATGCTCGACGACGGGTACAACAAGTACATGTTTGACGACGAGGGCTTGCCTGGGTGGTTCCTCGAGGAAGAGAGGAGGCA TCGCCAGCCTGTCAAACCGGTCACCAAGGAGGAGATGAACGCAATGCGGGCCCAGTTCAAAGAGATCAACGCACGGCCCGCTAAGAAGGTGGCCCAGGCC AAGGCTCGAAAGAAGCGTGCCGCCATGAGGAAGCTGGAGAAAGTCAAGAAGAAGGCCAACGCGATCTCAGACCAGACCGAGATTTCCGAGCCCTCGAAGA GCAAGATGATCGATAAGCTGTACAAGAACGCTGCTCCAAAGAGGCCGAAGAAGGAGTATGTAGTTGCGAAGAAGGGGGTCGCTGTGAAGGGTGGCAAGGG GAAAGTTGTAGTGGATCGGAGGATGAAGAAGGACGTCCGTGGAGTTAGCAAGAAAGGCAAAGGTGGCTCGAAGAAGAACGGTGGTAAGGGCCAGAAAGGC GGTAATGGCGGTAAAGGATCTGCAAGCAAAGGCGGTAAACCGAGACCCGCTGATAAGGAAACAAAGAGAGGATCTGCTCGACCGAGGTCGTTTTGA
AA sequence Show only first row Show all	>Lus10023555 pacid=23160540 polypeptide=Lus10023555 locus=Lus10023555.g ID=Lus10023555.BGIv1.0 annot-version=v1.0 MGKVKGKHRLDKYYHLAKEHGYRSRASWKLVQLDSKFKFLHSSRAVLDLCAAPGGWMQVAVEKVPVGSLVLGIDLVRIAPLRGALSIEQDITKSECRSKI KKIMGDNGVKAFDLVLHDGSPNVGGAWTQEAMSQNALVIDALKLATQVLAPKGNFITKVFRSQDYSAVIYCLNQFFEKVEVDKPLASRSASAEIFVLGLK YKAPAKIDNDLLDIRKLFAHVDTQRKPLDPLRGTKQKRHRDGYEDGQSMIRKVSSAADFIWSNTPLDVLGSVTSITFEDPVSLPIKDHELTTEEVKALCE DLPVLGKQDFKHLLKWRMNLRKALSPSEKASSAAAADSEEKKELDEDDKMLNEMEELTKAMERKKKREKKISAKRREKDKARKASGGMPMDVHEDGGYTD IELFSLASIKGKNDLVAIDNDENGDARDSDEEENPDNDARESSADSDSDAERQKYDATMEDFLDNLYERFVTKKEGSTKQRKRARQAYSEQLLDGENDNM EHSDYDSDREPADREANPLMIPLNDGEEPTKEEIANKWFAQEIFTKAAEEEDLVMSDSEQEDAPATEAAVMEVDKKQQEKRVAPKKAAVKTSEPDFEIVP APETDSSDSSSDESEDDSIEKKAEILACAKKMLRKKQREQMLDDGYNKYMFDDEGLPGWFLEEERRHRQPVKPVTKEEMNAMRAQFKEINARPAKKVAQA KARKKRAAMRKLEKVKKKANAISDQTEISEPSKSKMIDKLYKNAAPKRPKKEYVVAKKGVAVKGGKGKVVVDRRMKKDVRGVSKKGKGGSKKNGGKGQKG GNGGKGSASKGGKPRPADKETKRGSARPRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	0	1
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	1.0	0.9777
AT5G48240			unknown protein		Lus10041095 [exp]	3.2	0.9246
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	5.1	0.9426
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	5.5	0.9174
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	6.9	0.9297
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	7.6	0.8966
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10042588 [exp]	10.6	0.9100
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	11.1	0.9298
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	13.0	0.9238
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	15.2	0.9199

Compare expression of checked genes

Lus10023555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.