Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 459 / 5e-162 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 402 / 3e-139 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 389 / 3e-134 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 389 / 4e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G19540 347 / 2e-117 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 270 / 7e-88 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 252 / 2e-80 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 244 / 2e-77 ATPRR2 pinoresinol reductase 2 (.1) AT1G08580 60 / 5e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040442 [exp] 610 / 0 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 435 / 3e-152 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 431 / 7e-151 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 429 / 1e-149 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 416 / 9e-145 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 341 / 6e-116 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 285 / 3e-93 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10012147 [exp] 268 / 1e-86 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10007599 [exp] 276 / 4e-86 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 457 / 6e-161 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 432 / 2e-151 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 413 / 4e-143 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 409 / 2e-142 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 409 / 4e-142 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 373 / 7e-128 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 304 / 4e-102 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 296 / 1e-97 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 285 / 1e-93 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 281 / 7e-92 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10023557 pacid=23160608 polypeptide=Lus10023557 locus=Lus10023557.g ID=Lus10023557.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCACCAAGAGCAAGATCCTGTTCATCGGAGGAACTGGTTACATCGGCAAATTCATCGTGGAAGCCAGCGCCAAAGCCGGCCACCCGACTT ACGCCCTTGTCAGGAAATCGACTCTCTCAGCTCCCAGAAGATCCAAGCTCGTCAGCAGCTTGAAGAACTTGGGCGTCAATTTCCTAATCGGGGATTTGAA TGATCATGGAAGCTTGGTGGACGCAATGAAGAAAGTTGATGTGGTGATTTCAACAGTCGGGCATGGGATGCTGACTGAGCAGGTGAAAATCATAGCCGCT ATTAAGGAAGCTGGAAACGTCAAGAGGTTCTTCCCGTCGGAGTTTGGGAACGACGTGGATCGAGTGGTGGCAGTGGAGCCAGCGCAATCGGCATACAATG TCAAGGTTCAGATTCGTCGAGCTGTCGAAGCTGAAGGGATCCCATTCACATATGTCTCCTGCAACTGCTTTGCTGGTTACTTCCTCAGCAATTTGGCTCA GCCTTCTGGTGATGTCCCTCCCAGGGATAAAGTTATCATCTTGGGAGACGGCAATGCCAAAGCGGTTTTCAACAGGGAGGATGATATCGGGACGTATACG ATTCGAGCAGTGGACGATCCACGGACGTTAAACAAGCTTGTGTACATTAGGCCTCCGAACAACATATACTCGTTCAACGATCTGGCGTCTCTGTGGGAGA GGAAGATCGGGAAGAAACTGGAAAGGGTGTATGTTCCTGAAGAAGAGATTCTGAAGCACACTAGAGGAGATGTGATGCTGGCGCTGAACCATTCTATTCT GGTGAAGGGATGCCAGACAAGCTTCGAGATAGAGGATTCGTTCGGTGTGGAGGCATCGGAAATTTACCCTGATGTTAAGTATACTAGTGTTGATGAGTAT CTGAACCACATTGTTATTCGAGTTCCCAACGATCATCCGTCGATCCCAACATTCATCGTCGATAATTTAGAAAGGCGAATAGCAATTCGGGAAAATAGAG AACAATGGCGAAGTTCAATCAGGAAGAGGGCAGCGATAGCAGATAAAAAGAGAATCGCTCACGGAGATCCCCTCACCGCTAAATTGAAGGCTAAACAGCA GAATCAATCCGTCTCTGGTAAACGCAAGCGCAAGCTGTTGAACAAATGGCGCAGAGACCAGAAAGAAGCTGTAGAAAAAGGACTTGTCACCATGGAAGAT GTAGAGATGGCGGTTGCAGATGGTGAAGGCTCATCTAAAGATAGCAGTAAAATTTCCACCAAGTTGTTTAACGTAAAAAGGGGACTCAAGTTGAAGCAGT TAGACCGTATAAAAGGTAAAAAGAAAAGCAAGTCTAAGCCAACACCATCTACAACCTCAGTTGATGTGATGGTGGAGGAGTAA
AA sequence Show only first row Show all	>Lus10023557 pacid=23160608 polypeptide=Lus10023557 locus=Lus10023557.g ID=Lus10023557.BGIv1.0 annot-version=v1.0 MASATKSKILFIGGTGYIGKFIVEASAKAGHPTYALVRKSTLSAPRRSKLVSSLKNLGVNFLIGDLNDHGSLVDAMKKVDVVISTVGHGMLTEQVKIIAA IKEAGNVKRFFPSEFGNDVDRVVAVEPAQSAYNVKVQIRRAVEAEGIPFTYVSCNCFAGYFLSNLAQPSGDVPPRDKVIILGDGNAKAVFNREDDIGTYT IRAVDDPRTLNKLVYIRPPNNIYSFNDLASLWERKIGKKLERVYVPEEEILKHTRGDVMLALNHSILVKGCQTSFEIEDSFGVEASEIYPDVKYTSVDEY LNHIVIRVPNDHPSIPTFIVDNLERRIAIRENREQWRSSIRKRAAIADKKRIAHGDPLTAKLKAKQQNQSVSGKRKRKLLNKWRRDQKEAVEKGLVTMED VEMAVADGEGSSKDSSKISTKLFNVKRGLKLKQLDRIKGKKKSKSKPTPSTTSVDVMVEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	0	1
AT5G10070			RNase L inhibitor protein-rela...		Lus10003856 [exp]	3.9	0.8891
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	4.9	0.8696
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	4.9	0.8868
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	5.7	0.8768
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	6.7	0.8821
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011084 [exp]	7.2	0.8897
AT2G40600			appr-1-p processing enzyme fam...		Lus10029039 [exp]	8.1	0.8515
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	11.6	0.9029
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	11.9	0.8941
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	12.1	0.8497

Compare expression of checked genes

Lus10023557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.