Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34540 405 / 6e-143 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 330 / 3e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 318 / 9e-109 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 311 / 9e-106 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 291 / 1e-97 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 270 / 9e-90 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 205 / 3e-64 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 203 / 2e-63 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040443 [exp] 440 / 8e-157 AT4G34540 290 / 5e-98 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 326 / 1e-111 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 324 / 6e-111 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 312 / 4e-106 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 293 / 6e-99 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 285 / 1e-95 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 285 / 2e-93 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 254 / 5e-84 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10007599 [exp] 225 / 9e-69 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118000 [exp] 441 / 5e-157 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 320 / 2e-109 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 307 / 3e-104 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 300 / 9e-102 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 296 / 2e-99 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 291 / 7e-98 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 281 / 7e-94 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 232 / 9e-75 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 230 / 4e-74 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133300 [exp] 229 / 1e-73 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10023558 pacid=23160517 polypeptide=Lus10023558 locus=Lus10023558.g ID=Lus10023558.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAGAAGAGCAGAGTGTTGGTAATCGGCTCAACAGGCAATTTGGGTTACCACTTAGCAGAATCCAGCCTCAAATCCTCTCACCCAACTCTCC TCCTCGTCAGAGAATCGGCTTTCCACGACCCAATCAAAGCTCACAAGCTCCAATCCCTCACCAATGCCGGCGCCTCCGTCATTAAGGGTTCATTGCAAGA CGAGAGTAGCCTTGTGGAGGCAGTGAATCGAGTTGACGTTGTAATCTGTTCGATTCCGTCGAAACAAGCTCACGATCAGAAGCTGCTTATCAAAGTCATC AAACAAGCAGGAAGCCGGATAAAGAGGTTCATCCCGTCTGAGTTCGGAGCAGATGCAGACAGATCACAGATATCAGGAATGGATCATGGTTTCTACTCCA GGAAATCTGAGATCAGACGGTTGTTAGAAGCCGAATCAATCCCATACACATACGTCTGCTGCAATCTCTTAATGAGCTACTACCTTCCTTCCCTTGTCCA GCCGGGACTCAAATCTCCACCTCGAGACAAGGTCATAATCTTCGGAAACGGCAATGTCAAAGGTGTGTTTGTGAAGGAACGAGATGTAGCTGCCTTCACG ATGAGAGCAGTGGACGATCCTTCCACGCTGAACAAGATTCTGTACTTGAGACCTCCGGGGAACGTGTGTTCGATGAACGAGATTGTGACGCTATGGGAAG GGCTGATTGGGATGAATGTGGAGAGATGCTACGTTTCGGAGGAACAGATGTTGAAGAGAATCAATGAGATTTCGTATCCTGGGAATATGGGGCTGGTGTT CATATACTCGGTGTTTGTGAGAGGAGATCATACCTACTATGAGATTGATCCTGCTACTGGAGTCGAAGGCTCGAAGCTGTATCCAGATGTTGAGTATACT ACCATTGCTGAGTACTTGTCCTCCTTGGTTTGA
AA sequence Show only first row Show all	>Lus10023558 pacid=23160517 polypeptide=Lus10023558 locus=Lus10023558.g ID=Lus10023558.BGIv1.0 annot-version=v1.0 MEKEKSRVLVIGSTGNLGYHLAESSLKSSHPTLLLVRESAFHDPIKAHKLQSLTNAGASVIKGSLQDESSLVEAVNRVDVVICSIPSKQAHDQKLLIKVI KQAGSRIKRFIPSEFGADADRSQISGMDHGFYSRKSEIRRLLEAESIPYTYVCCNLLMSYYLPSLVQPGLKSPPRDKVIIFGNGNVKGVFVKERDVAAFT MRAVDDPSTLNKILYLRPPGNVCSMNEIVTLWEGLIGMNVERCYVSEEQMLKRINEISYPGNMGLVFIYSVFVRGDHTYYEIDPATGVEGSKLYPDVEYT TIAEYLSSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	3.2	0.7849
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	7.9	0.7783
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10022248 [exp]	9.2	0.7421
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	9.2	0.7558
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	10.2	0.7168
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10033481 [exp]	10.5	0.6960
AT5G42450			Pentatricopeptide repeat (PPR)...		Lus10034408 [exp]	14.7	0.7065
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	16.7	0.7446
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	21.9	0.7408
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	22.5	0.7255

Compare expression of checked genes

Lus10023558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.