Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040445 [exp] 596 / 0 ND / Lus10040444 [exp] 464 / 6e-163 ND / Lus10022836 [exp] 338 / 9e-111 ND / Lus10038309 [exp] 312 / 1e-98 ND / Lus10029057 [exp] 291 / 1e-90 ND / Lus10024122 [exp] 289 / 5e-90 ND / Lus10005392 [exp] 286 / 5e-89 ND / Lus10024121 [exp] 274 / 4e-84 ND / Lus10006341 [exp] 267 / 2e-83 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156500 [exp] 615 / 0 ND / Potri.001G388900 [exp] 381 / 6e-126 ND / Potri.011G108300 [exp] 377 / 1e-124 ND / Potri.001G388801 [exp] 377 / 4e-124 ND / Potri.001G387900 [exp] 376 / 7e-124 ND / Potri.001G388600 [exp] 374 / 7e-123 ND / Potri.001G388450 [exp] 371 / 8e-122 ND / Potri.001G388100 [exp] 368 / 2e-121 ND / Potri.001G388200 [exp] 366 / 6e-120 ND / Potri.011G047300 [exp] 351 / 6e-114 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10023559 pacid=23160619 polypeptide=Lus10023559 locus=Lus10023559.g ID=Lus10023559.BGIv1.0 annot-version=v1.0 ATGGATCCTGGAAAATGGATCCTCCCACTCACCATCTCCACCATTCTCGCCGTCACCCTCTTCATCTTCTCCTCCCCTCAACTCGCCACTGAACTCGTCG GGAAGCTAAACGGCGTCGTACCAGACGTTTTCTTAGGGTGGTCAACGCCGGTGAACAATCTGCAGAAGGGCAAACTCCTCCCAGTCCAAGTCAACTTATC AGCCTGCCTCCCGACATTCGGCCGACCGGGGAAGCCAGTCTACTGCTGCCCGCCGCGAAACATCCTCGACGACCCAATCATTGACTTCCAGTTCCCCGAC CCGGCGACCAACCCGGTCCGGGTCCGCCGCTCGGCGAACCGGCTGGATGAGGAGTCCATTGCCAAATACGAGAAGGCGGTCGCGATGATGAGATCTCTAC CTTACTCCGACCCGAGGAGCTACACGCGCCAGGCGAACTTACACTGTCAGTACTGCACCGGATCTTTCCTCCAGCAGCACTCCACGCTTCCGGTTCGGGT ACACAAGACGTGGATCTTCTTCCCCTGGCATCGAATGCTCTTGTATTTCCACGAGCGGATCTTGGGGAGCTTGATCGGAGACGATACATTCGCGATTCCG TTCTGGCCATGGGATCTGCCGGAAGGGATGATGCTGCCGGAGTTTTACCTCAACGGGTCGTTCAAGAACGAGCAGCGTGACCCGACCCATTACCCCCCGG CGGTGGCGGATCTGGATTTCCAGCTGGCGGAAGGCGGGTCGACGCCGGAGGAACAGGTGGAGTTGAATCTGGCTCTGATGTATAACCAGATGGTCTCTGG CGCTAAGACAGCGGAGCTATTCATGGGGTGTGCTTACAAGACTGGCGAAGGTGGTGACTGTTTCGGACCCGGGACAATGGAGCGGGCCCCGCATAACACG ATTCATAAGTGGGTCGGGTCGGCTTTCCATACTGGGAGGGAGGACATGGGGGTCTTTTACTCGGCAGCTCGCGACCCGAGTTTCTACGCTCACCACTCGA ATATCGACCGGTTGTGGGAGGTTTGGAGGGCGACTCACCCTGAGATGAACGACCCGGAGTTCCTCGACTCGTCGATGTACTTCTACGACGAGAAGCTCCA GTTGAACCGGATCCGGTTCAGGGATGTCATGGACATGGACAAATTGAGGTACCGGTATGATGACGTGGTCAATACGTGGATGAATGCGAGGCCGAAGCCC TCGGTCGAGCCTAGGTTAGCCAAGCGCGAGCTAAGGAGGAGGGAGATGGAACAAGAGAACGTGTTGGAGATGCCGTCAGAGCATTTCCAACCAACCGGTC GGTCACTCGACTCCCAAGTCACGATCCGGGTGGTTCGGCCTAGAGCAGTCAGGACTCGAAAGGATAAAGTTGAATTTGAGGAGATATTGGTGGTGGAAGG GATTGACGTGAAGGCGGAGGAGTTTGTTAAGTTCGACGTCTACATCAACGTTGTCAACGCGACGATAATGAGCCCCAAGTATCGGGAGTTTGCGGGGACG TTTACCGATATTCCGATGGGTGTATCGTTCGGAAAGAAGACGACGTTGGAGCTTGGGATTTCGGAAGTATTAGAGGATTTGGAGGCGGATCGAGACCGAT TTATATGGGCGACATTGATGCCGAGGACGGAAAGTTGTGACAAAGTTACGGTTGATGGGTTAAGCATCAAGCACAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10023559 pacid=23160619 polypeptide=Lus10023559 locus=Lus10023559.g ID=Lus10023559.BGIv1.0 annot-version=v1.0 MDPGKWILPLTISTILAVTLFIFSSPQLATELVGKLNGVVPDVFLGWSTPVNNLQKGKLLPVQVNLSACLPTFGRPGKPVYCCPPRNILDDPIIDFQFPD PATNPVRVRRSANRLDEESIAKYEKAVAMMRSLPYSDPRSYTRQANLHCQYCTGSFLQQHSTLPVRVHKTWIFFPWHRMLLYFHERILGSLIGDDTFAIP FWPWDLPEGMMLPEFYLNGSFKNEQRDPTHYPPAVADLDFQLAEGGSTPEEQVELNLALMYNQMVSGAKTAELFMGCAYKTGEGGDCFGPGTMERAPHNT IHKWVGSAFHTGREDMGVFYSAARDPSFYAHHSNIDRLWEVWRATHPEMNDPEFLDSSMYFYDEKLQLNRIRFRDVMDMDKLRYRYDDVVNTWMNARPKP SVEPRLAKRELRRREMEQENVLEMPSEHFQPTGRSLDSQVTIRVVRPRAVRTRKDKVEFEEILVVEGIDVKAEEFVKFDVYINVVNATIMSPKYREFAGT FTDIPMGVSFGKKTTLELGISEVLEDLEADRDRFIWATLMPRTESCDKVTVDGLSIKHKKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023559 [exp]	0	1
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	2.8	0.9624
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	3.2	0.9617
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	4.9	0.9500
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	5.2	0.9600
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	5.9	0.9497
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	6.0	0.9375
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	6.3	0.9484
AT1G34350			unknown protein		Lus10017068 [exp]	6.4	0.9162
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10028541 [exp]	7.1	0.9127
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	7.3	0.9468

Compare expression of checked genes

Lus10023559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.