Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21610 367 / 1e-126 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G19730 265 / 5e-86 Pectin lyase-like superfamily protein (.1) AT5G55590 249 / 8e-80 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G07430 242 / 2e-77 Pectin lyase-like superfamily protein (.1) AT5G47500 234 / 2e-74 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT3G17060 230 / 4e-73 Pectin lyase-like superfamily protein (.1) AT5G61680 228 / 2e-72 Pectin lyase-like superfamily protein (.1) AT5G07420 225 / 5e-71 Pectin lyase-like superfamily protein (.1) AT3G29090 219 / 6e-69 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT2G36710 221 / 9e-69 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026347 [exp] 468 / 1e-166 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10042315 [exp] 444 / 4e-157 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10000045 [exp] 396 / 4e-140 AT2G21610 214 / 8e-69 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10040446 [exp] 350 / 7e-121 AT2G21610 181 / 9e-55 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 264 / 1e-85 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 254 / 3e-82 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 253 / 2e-81 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 249 / 3e-80 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 247 / 7e-80 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156300 [exp] 421 / 4e-148 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.018G068400 [exp] 264 / 1e-85 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 251 / 6e-81 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 241 / 6e-77 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 240 / 1e-76 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 240 / 5e-76 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 227 / 4e-72 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.008G104800 [exp] 226 / 3e-71 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 223 / 5e-70 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 223 / 5e-70 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10023560 pacid=23160578 polypeptide=Lus10023560 locus=Lus10023560.g ID=Lus10023560.BGIv1.0 annot-version=v1.0 ATGATGATCCACCGTCTAGCAACAACCATTATCCTAGCACTACTATTACTCCAATTCCAAACTACCCTAGCTTCTGATGCTTCACCTACTCCTCCAAAGG ACTGGTCAGTGGCCAATCTGATAAGGGTGGACAATTCCGCCGCTGGGAGAGGAGATTTCGAGACGATCCAGGAAGCAATCGACTCGGTTCCTTCTAACAA CTCCGAGCTGGTCTTCATCTGGGTCAAGCCAGGAGTCTACGTCGAGAAAGTCATAGTGCCGAAGGACAAGCCTTTCATCACCCTAGGTGGTACCAAGCCA GCTGCGAACGACACTGTCGTTACGTGGCACGAGAAGGGGGATATATTCGAGTCTGCCACTCTGTCTGTTCTGGCTCCGTACTTTGTAGCTCGATACCTTA CTATCCAGAACACGTTCGGGAGAGGAGGCAAAGCTGTGGCGTTGAGGGTATCGGGAGACAGAGCTGCATTCTTCGATTGCAAGATGTTGTCGTACCAGGA TACGCTTCTCGACGACACTGGATCGCATTACTATCGAAACTGTTACATCGAAGGAGCCACCGATTTCATCTGCGGAGACGCTTCCTCCCTCTTCGAGGCG AGCGATATCTCTTTGCTTGTTACATCTCTGTTTCACAGCAACGGCTCGATAACCGCCCAAGATAGGGGCTCGGAGTCGGATCGAACCGGGTATGTTTTCT TGCGATGCAAGGTAACCGGGGTTGGAGCAACACTTCTAGGAAGGGCATGGGGTTCTTATTCCAGGGTGGTTTATGCCTACTCTTACTTAACCTCTGCTGT CTTGCCAATCGGTTGGAGTGATTGGGGAGACAAATCGAAACAAAGGACTGTGTTCTACGGAGAGCACAAGAATTACGGACCTGGAGCTAATAGATCGAAG AGGGTAGCTTGGTCGAAGAAGCTCGCAATCGATGAGGTTTCGCCTTTTCTGAGTAAAGAAATGATTGGCGGGAAGAGTTGGATTAGGGCCAAGCCTAAGT TCTTCAGAATTGGGTCCAAAGTTTTCAAAGCTGGGACTCATGGAACTCCCTCAATGACCTGA
AA sequence Show only first row Show all	>Lus10023560 pacid=23160578 polypeptide=Lus10023560 locus=Lus10023560.g ID=Lus10023560.BGIv1.0 annot-version=v1.0 MMIHRLATTIILALLLLQFQTTLASDASPTPPKDWSVANLIRVDNSAAGRGDFETIQEAIDSVPSNNSELVFIWVKPGVYVEKVIVPKDKPFITLGGTKP AANDTVVTWHEKGDIFESATLSVLAPYFVARYLTIQNTFGRGGKAVALRVSGDRAAFFDCKMLSYQDTLLDDTGSHYYRNCYIEGATDFICGDASSLFEA SDISLLVTSLFHSNGSITAQDRGSESDRTGYVFLRCKVTGVGATLLGRAWGSYSRVVYAYSYLTSAVLPIGWSDWGDKSKQRTVFYGEHKNYGPGANRSK RVAWSKKLAIDEVSPFLSKEMIGGKSWIRAKPKFFRIGSKVFKAGTHGTPSMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	0	1
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	1.0	0.9910
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	2.0	0.9579
					Lus10018556 [exp]	3.5	0.9193
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019030 [exp]	5.5	0.8728
					Lus10023006 [exp]	11.4	0.8743
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	12.2	0.8570
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	13.1	0.9108
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	13.3	0.8680
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	13.4	0.8699
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10043177 [exp]	17.5	0.8699

Compare expression of checked genes

Lus10023560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.