Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35550 194 / 2e-61 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT1G20700 154 / 6e-47 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT1G20710 124 / 3e-35 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT2G33880 73 / 8e-15 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT3G18010 71 / 2e-14 HD WOX1 WUSCHEL related homeobox 1 (.1) AT5G45980 71 / 3e-14 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT1G46480 67 / 3e-13 HD WOX4 WUSCHEL related homeobox 4 (.1) AT2G28610 66 / 6e-13 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT3G11260 64 / 1e-12 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT5G59340 62 / 2e-11 HD WOX2 WUSCHEL related homeobox 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040447 [exp] 354 / 4e-125 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10016026 [exp] 136 / 3e-39 AT4G35550 149 / 4e-44 WUSCHEL related homeobox 13 (.1) Lus10012250 [exp] 139 / 4e-39 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10005282 [exp] 71 / 6e-14 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10016569 [exp] 69 / 9e-14 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10018011 [exp] 69 / 2e-13 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10042007 [exp] 69 / 2e-13 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10040840 [exp] 67 / 6e-13 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10028271 [exp] 66 / 7e-13 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101800 [exp] 208 / 2e-67 AT4G35550 303 / 2e-104 WUSCHEL related homeobox 13 (.1) Potri.002G008800 [exp] 185 / 6e-59 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.005G252800 [exp] 180 / 7e-57 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.011G061400 [exp] 72 / 2e-14 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 71 / 4e-14 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.002G124100 [exp] 68 / 9e-14 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 68 / 9e-14 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.012G047700 [exp] 70 / 1e-13 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.015G039100 [exp] 68 / 3e-13 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.001G237900 [exp] 63 / 7e-12 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10023561 pacid=23160530 polypeptide=Lus10023561 locus=Lus10023561.g ID=Lus10023561.BGIv1.0 annot-version=v1.0 ATGGAGTGGGATTCCACCGCCGTTGGTTCTAATCACAAACGCCACCACGAAAGCTGCAACAACAATAATAATGGAGACCCGAATACCGCCAACAGCAGTA GTAGCCCGAATGATCTGCTGTACGTGAAGGTAATGACAGATGAGCAGCTTGAGACTCTCCGGAAGCAGATCGCCGTCTACTCCACCATCTGCGAACAGCT CGTCGAGATGCACAAAACCCTGTCCTCCTCCCACCAAGATTTTGCCGCCGCAGGGAGGTTGGGAAATATGTACTTGGACACGCTGATGGGCGGAGGAGGA GGCCAGAAGCTGAGCGGCGGGCGACAGCGGTGGACGCCGACGCCCGTGCAGCTTCAAATCCTTGAGCAGATCTTCGAGCAAGGGAACGGGACACCGACGA AGCAGAAGATCAAGGAGATCACGACCCAGCTCAGCCAGCACGGCCAGATCTCGGAGACCAACGTCTACAATTGGTTCCAGAACCGGCGCGCCCGGTCCAA GCGTAAACAGCACCTTACGAATCTCCCGACTTCCGCTGCCGCGGGCACGAACAATAATGATAATGCTGGTGCTACTAGTGGGGATTTGTCGTCAGAAGTG GAGACTACTACTGCTACTGAAGTTGATTCGCTTAACGATCAAGACATCATCATCCAGTTGTTGGCTCAGTCTCAGTATCAGGAAAAACAATGCTGGAATT AG
AA sequence Show only first row Show all	>Lus10023561 pacid=23160530 polypeptide=Lus10023561 locus=Lus10023561.g ID=Lus10023561.BGIv1.0 annot-version=v1.0 MEWDSTAVGSNHKRHHESCNNNNNGDPNTANSSSSPNDLLYVKVMTDEQLETLRKQIAVYSTICEQLVEMHKTLSSSHQDFAAAGRLGNMYLDTLMGGGG GQKLSGGRQRWTPTPVQLQILEQIFEQGNGTPTKQKIKEITTQLSQHGQISETNVYNWFQNRRARSKRKQHLTNLPTSAAAGTNNNDNAGATSGDLSSEV ETTTATEVDSLNDQDIIIQLLAQSQYQEKQCWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	0	1
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10040447 [exp]	2.4	0.8572
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	3.5	0.8547
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	10.8	0.8376
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	11.5	0.8378
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	11.8	0.8179
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	12.8	0.8275
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	13.5	0.8008
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	14.0	0.8096
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	15.1	0.8261
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	19.5	0.8042

Compare expression of checked genes

Lus10023561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.