Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49040 1665 / 0 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT4G15900 91 / 1e-18 PRL1 pleiotropic regulatory locus 1 (.1) AT3G49660 86 / 1e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18860 85 / 2e-16 transducin family protein / WD-40 repeat family protein (.1.2) AT5G08390 82 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 81 / 1e-15 WD-40 repeat family protein / notchless protein, putative (.1) AT5G50230 80 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 78 / 5e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 77 / 7e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 79 / 1e-14 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040449 [exp] 2169 / 0 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10041007 [exp] 89 / 1e-17 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040490 [exp] 89 / 2e-17 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 85 / 2e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 85 / 3e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 87 / 6e-17 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10003487 [exp] 83 / 1e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 84 / 3e-16 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 84 / 3e-16 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049500 [exp] 1911 / 0 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 1890 / 0 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.010G255400 [exp] 90 / 5e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 86 / 4e-17 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 84 / 4e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125104 [exp] 85 / 2e-16 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G112184 [exp] 85 / 2e-16 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G087200 [exp] 82 / 3e-16 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 82 / 3e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 84 / 5e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0330 [flax] [poplar] AVL9 PF02141 [flax] [poplar] DENN DENN (AEX-3) domain CL0431 [flax] [poplar] PF PF03456 [flax] [poplar] uDENN uDENN domain CL0431 [flax] [poplar] PF03455 [flax] [poplar] dDENN dDENN domain
Representative CDS sequence Show only first row Show all	>Lus10023563 pacid=23160605 polypeptide=Lus10023563 locus=Lus10023563.g ID=Lus10023563.BGIv1.0 annot-version=v1.0 ATGGCGCCGATCTTCGAGTACTTCGTGGTGTGCGGGCTTGGCCCCGAGATTCGAACACTTGACGGGAACAAAGGCTACCATGGAGTTGGAGTTCTGTACT TGCCATCGCTTCTTGATCAGTACCCTCCGGATACTCACTTTCCTCCTCCTCCGCAGCTTCCCACTTGTGTGTTGCCAGCTGGCGTGGAAATCTTCTCTGC TGGATTTGACGTGAATGATCCTTCCTCTTCACCACGGAGCTATCCTATTGTATTAACTGGTACAGTTTACTTCATGCTAGCTGCTACACTTGCTTTACAT CTTGGATATCAGTCTATTATCAGAAAGCACTACTTTGTTAGGAGTAATAAGTATCAAGAAGCTGCTAGTCTGCTAGAGGGTGATGGGTCGAAGATTTACG TTAGTTGCATTGCATTTCGAGATCCAGTTAGTGAGGATATTGCTGAAGCGTACCGGATACCTCCAAATTCATTTGCTGACAAGTGCATTTGTCTCATTTC ACGGTATCCTAGTTTTGGTGTCCTTCGCAGTGCTCTTGAAGAACTATTTGCACTCTGCTTTTCTTCAGGTGGGAGTAGCAAGCCTTTATGGGATGTAATT GCTCACATGGTATCCAATGTACCGTTGCCTACTCCTGGGAAAGATCGGGTGTTGTTTGCTATTGAGAATTGTCTGCTTTCAGTGGATGCTCCACCAAAAG ACGGTCTTCCTCATGTTGATATATCATTTCAACCACTTGTCCAATGTTTGGATGTTGACAACTTAATTCTGCTTTTTACTGCTGTTCTGCTTGAGAGGAG GATTTTGCTGCGATCCGATAAGTATTCGCTTTTAACTCTAGTGTCAGAAGCCATATGCCATCTGATATATCCCTTTAGGTGGCAGCATGTGTACATTCCA TTACTTTTTTTCAGTGGAGTAGACTATATTGATGCTCCTACACCATATATGATGGGTCTTCATTCAAGTGTCGATACATCCTACCTTGTAATGGACGGTG TGGTTGTTGTGGATCTTGAGTATAATCGAATAAGCACAACAGAGGAAATACCTCCTATCCCAGAGCCTGAATTCACTTCTCTACGTATGGACATATTGAA CAACCAGCCATGGGGAGAGGAGCTAGATCTTCAACTTAGGTTAATATTCCTCAGGTTTTTTGCGTCAATCTTAGGTGGCTACCGCAACTTCATCGAAAAT AGTGCAGCTCAGGCCTTCAATAATCAGGCATTCTTGAAGAAGCGCTCTAGGTCAACACATCAACCCCCAGATGCCATGATATCTCAATTTTTGGATACTC ATGGTTTCTTGGATTTTCTGGGAAGAACTGGGAGCCTCGAAGAAAGTGACAATAATCTCTTAGACAAGTTACAAGATGCCATTGGAAGAGGTCAAAATCC CATGTCAATTCTTCCCTCATCTTCGGCAGAACCTGAATTTGTGACCATACCAGATCCAAATGGGGGATCGTCAGGATCAGGTGCAAAATATATTTATGAC AGGTTTCCTACTAATATAAGATCTGAAGAGCAGGAGGAGAAGAGGAAACAGATTCTTGCTGCAGCAAGTGGAGCTTTTGAGTATATTAAAACTGCTCCCG CCTCACCATCTGTGCAAGTGGGAAAGGACGCTCTTAGTCCAATGGAGAGGGCTGCAGAAAGAGACCGCATGGTCCTCGACATTATAGTTAAGCTGCAGGG CTTATGGCTGCGTCTGTTGAAATTGGGAGTCACTGATGATCCACTTTCCTCATTTGAATATGGGACAATTCTAGCACTGATCGAGTCTGATGCAGAGGGA ATTGGTGGTAGCGGCTTTGTCGAATGTATAAGAGAGCATATACACTCTGGTTGGCAGTGTCAGTTGACTGATGAGCAATTCGTTGCAGTTAAAGAATTGC TTAAAACAGCAATTGGTCGGGCAACATCACGGAATGATCTCTCAACCATTAGAGATGCACTGGAGGTATCTGCTGAGATGTATAAGAAAGACAGCAACAG TGTACCAGACTTTGTGCAACGCCATCTTATCTCTTTGTCTATATGGGAAGAACTACGGTCGGCCAATTATGCTGCTCAAGTGACAACACAGCTAATCCTA GTCTCTTCACACATGGCTGGTCTAGGAATTCCTGATACCGATGCTTGGTATATGATCGAAATGATATCAGAGAAGAATAGCATTGGATACAAGCAGCTTA TCCAACTTCGGGGATTTTTAACACATATACAGCAACTTCGCATTGGGTACTGGGGAGCCTCATCGATAAAGACCCCATCCATTACATCTCTTGGATTGAC TTCTCCTCGCCCTAAAGATGGCACTGATGAAAACCAACAACCTGCCGAGGCATCTGTTGTTGGAAGGAGCTGGGTTCAGAGCATGTTTAGTAGAGATTCG TCAAGAGTAAACTCGTTTTCTCGTGTCCGTAAATGGACTTCTGATGGTCCTTCAGATTCTTCTGCTGGTGGCCAAAAGAAGCTGCAAACCAATGTTCGAG TACTTAGGGGCCACAACGGTGCCGTAACTGCTTTGCACTGTGTGACAAGAAGAGAGGTCTGGGATTTGGTGGGAGACCGTGAAGATGCCGGTTTCTTTAT TAGTGGAAGCACAGACTCCTTGGTTAAGATCTGGGATCCTAGCATTCGTGGTTCCGAACTCCGAGCAACTTTGAAAGGGCATAAAAAAACTGTTCGTGCT ATAAGTTCCGATCGAGGGAAGGTGGTGTCAGGATCTGATGACCAGAATGTTATTGTGTGGGATAAACAAACGTCACAGCTTCTTGAAGAATTAAAGGGCC ACGATGCTCAGGTCAGCTGTGTCCGGATGCTGTCAGGTGAGAGGGTACTCACCGCTGCTCATGATGGAACCGTGAAGATGTGGGATGTTAGAACGGACAC CTGTGTTGCAACAGTTGGCCGTTGCTCTAGTGCAGTCATGTGCATGGAATACGACGACTCCACTGGTATCCTTGCTGCTGCTGGCAGAGATGCGATTGCA AATGTCTGGGATATCCGAGCCGGAAAACAAATGCATAAGCTCACAGGCCACACAAAATGGATTCGGTCTGCTAGAATGGTTGGAGATACTTTGGTAACAG GTAGTGATGATTGGACTGCCAGAGTGTGGTCTGTCTCGCGAGGTACGTGCGATGCCGTACTAGCCTGCCATGCTGGGCCAATCTTGTGTGTGGAGTACTC CGAAGCAGATCGAGGAATTATAACAGGTTCAACTGATGGGCTATTACGATTCTGGGAAAATGAGGAAGGAGGCATAAAATGCACGAAGAACGTTACGATC CATACAGCATCCATACTGTCCATCAACGCTGGCGAGAACTGGCTGGGAGTAGGAGCAGCTGACAATTCCATGTCCCTCTTCAACCGGCCTCAAGACCGAC TCGGTGCCATGGCTCCTGGTTCGGGTTCAAAACTGCCCGGTTGGCAACTTTACAGGACACCCCAAAAGAACGTCGCCATGGTGCGATGTGTGGCCTCGGA TCTCGAACGGAAGAGGATCTGCAGCGGTGGCCGGAACGGGGTGCTGAGGTTGTGGGAAGCAACCATCAACATATAA
AA sequence Show only first row Show all	>Lus10023563 pacid=23160605 polypeptide=Lus10023563 locus=Lus10023563.g ID=Lus10023563.BGIv1.0 annot-version=v1.0 MAPIFEYFVVCGLGPEIRTLDGNKGYHGVGVLYLPSLLDQYPPDTHFPPPPQLPTCVLPAGVEIFSAGFDVNDPSSSPRSYPIVLTGTVYFMLAATLALH LGYQSIIRKHYFVRSNKYQEAASLLEGDGSKIYVSCIAFRDPVSEDIAEAYRIPPNSFADKCICLISRYPSFGVLRSALEELFALCFSSGGSSKPLWDVI AHMVSNVPLPTPGKDRVLFAIENCLLSVDAPPKDGLPHVDISFQPLVQCLDVDNLILLFTAVLLERRILLRSDKYSLLTLVSEAICHLIYPFRWQHVYIP LLFFSGVDYIDAPTPYMMGLHSSVDTSYLVMDGVVVVDLEYNRISTTEEIPPIPEPEFTSLRMDILNNQPWGEELDLQLRLIFLRFFASILGGYRNFIEN SAAQAFNNQAFLKKRSRSTHQPPDAMISQFLDTHGFLDFLGRTGSLEESDNNLLDKLQDAIGRGQNPMSILPSSSAEPEFVTIPDPNGGSSGSGAKYIYD RFPTNIRSEEQEEKRKQILAAASGAFEYIKTAPASPSVQVGKDALSPMERAAERDRMVLDIIVKLQGLWLRLLKLGVTDDPLSSFEYGTILALIESDAEG IGGSGFVECIREHIHSGWQCQLTDEQFVAVKELLKTAIGRATSRNDLSTIRDALEVSAEMYKKDSNSVPDFVQRHLISLSIWEELRSANYAAQVTTQLIL VSSHMAGLGIPDTDAWYMIEMISEKNSIGYKQLIQLRGFLTHIQQLRIGYWGASSIKTPSITSLGLTSPRPKDGTDENQQPAEASVVGRSWVQSMFSRDS SRVNSFSRVRKWTSDGPSDSSAGGQKKLQTNVRVLRGHNGAVTALHCVTRREVWDLVGDREDAGFFISGSTDSLVKIWDPSIRGSELRATLKGHKKTVRA ISSDRGKVVSGSDDQNVIVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVMCMEYDDSTGILAAAGRDAIA NVWDIRAGKQMHKLTGHTKWIRSARMVGDTLVTGSDDWTARVWSVSRGTCDAVLACHAGPILCVEYSEADRGIITGSTDGLLRFWENEEGGIKCTKNVTI HTASILSINAGENWLGVGAADNSMSLFNRPQDRLGAMAPGSGSKLPGWQLYRTPQKNVAMVRCVASDLERKRICSGGRNGVLRLWEATINI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	1.0	0.9410
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	2.0	0.9253
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	4.9	0.8605
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	6.2	0.9120
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	7.0	0.8879
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	9.0	0.8830
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	9.8	0.8695
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	10.5	0.8621
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	13.0	0.8999
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	13.0	0.9081

Compare expression of checked genes

Lus10023563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.