Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75250 100 / 5e-29 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT2G21650 92 / 1e-25 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT4G39250 89 / 8e-25 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT1G19510 87 / 4e-24 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT2G18328 79 / 8e-21 MYB ATRL4 RAD-like 4 (.1) AT5G58900 74 / 2e-17 MYB Homeodomain-like transcriptional regulator (.1) AT5G05790 72 / 9e-17 MYB Duplicated homeodomain-like superfamily protein (.1) AT2G38090 72 / 1e-16 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT3G11280 71 / 2e-16 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT4G36570 67 / 2e-16 MYB ATRL3 RAD-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040450 [exp] 158 / 3e-52 AT1G75250 98 / 5e-28 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 99 / 2e-28 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10023568 [exp] 98 / 3e-28 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10014301 [exp] 97 / 6e-28 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 98 / 8e-28 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10026009 [exp] 96 / 1e-27 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10040453 [exp] 96 / 2e-27 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10041752 [exp] 94 / 1e-26 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 94 / 2e-26 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023800 [exp] 107 / 2e-32 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 103 / 2e-30 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155866 [exp] 102 / 5e-30 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G122200 [exp] 100 / 3e-29 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155400 [exp] 98 / 2e-28 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G035000 [exp] 96 / 1e-27 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 95 / 2e-27 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 94 / 6e-27 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G025100 [exp] 84 / 1e-22 AT1G75250 91 / 1e-25 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 84 / 1e-22 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023564 pacid=23160463 polypeptide=Lus10023564 locus=Lus10023564.g ID=Lus10023564.BGIv1.0 annot-version=v1.0 ATGTCTTCAAACAATGGACTCGCGTGTACTTTATGGACGGCGAGGGAGAACAAGCTGTTCGAGGAGGCTCTGGCGCTGCACGACAAGGACACTCCTGACC GTTGGATCAACGTGGCCAACGCCGTCGGCAGCGGCAAGTCGGCGGAGGAAGTGAAGCTGCAGTATGACATCCTGGTTGCGGATGTTGCACGTATAGAATC CGGTCGGGTTCCCATCCCTGAGTATAGGACCGGTACTCCAAAGCTTGCATCTCGCTACTGA
AA sequence Show only first row Show all	>Lus10023564 pacid=23160463 polypeptide=Lus10023564 locus=Lus10023564.g ID=Lus10023564.BGIv1.0 annot-version=v1.0 MSSNNGLACTLWTARENKLFEEALALHDKDTPDRWINVANAVGSGKSAEEVKLQYDILVADVARIESGRVPIPEYRTGTPKLASRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10023564 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10022912 [exp]	1.0	0.9755
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	4.0	0.7228
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10023325 [exp]	4.9	0.8754
					Lus10032804 [exp]	8.8	0.7356
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	12.6	0.7058
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	13.9	0.7058
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	15.0	0.7058
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	16.0	0.7058
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	17.0	0.7058
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10002042 [exp]	18.2	0.6604

Compare expression of checked genes

Lus10023564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.