Plant FIBer expression Database

Lus10023565 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57150 724 / 0 ATNAP57, ATCBF5, NAP57 homologue of NAP57 (.1)
AT5G14460 102 / 1e-22 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035418
[exp]
779 / 0 AT3G57150 647 / 0.0 homologue of NAP57 (.1)
Lus10040451
[exp]
736 / 0 AT3G57150 582 / 0.0 homologue of NAP57 (.1)
Lus10003661
[exp]
103 / 3e-23 AT5G14460 628 / 0.0 Pseudouridine synthase family protein (.1)
Lus10022284
[exp]
102 / 4e-23 AT5G14460 551 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G044100
[exp]
795 / 0 AT3G57150 729 / 0.0 homologue of NAP57 (.1)
Potri.016G041200
[exp]
793 / 0 AT3G57150 741 / 0.0 homologue of NAP57 (.1)
Potri.001G343100
[exp]
100 / 5e-22 AT5G14460 585 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
CL0649 PseudoU_synth PF08068 DKCLD DKCLD (NUC011) domain
CL0178 PUA PF01472 PUA PUA domain
Representative CDS sequence
>Lus10023565 pacid=23160591 polypeptide=Lus10023565 locus=Lus10023565.g ID=Lus10023565.BGIv1.0 annot-version=v1.0
ATGGCGGAAGTTGAAGTCTCCCGCTCCGATAAGAAAAAGCACAAGAAGAAGACCGGTTCAGCTGACCCGGAAACCGACGCTGACCCCATGTCCGCCGTAG
CCGCCGCCGTCAATGGCGGCGACTACCTGATCAAGCCCCAGAGCTTCACGCCGGCGATCGACACCTCTCAGTGGCCTATCCTCCTCAAGAACTACGACCG
CCTCAATGTCCGCACAGGTCACTACACTCCACTCCCTTCCGGCTTCTCTCCGCTCAAGAGACCTCTGGCCGAGTACGTCCGCTACGGTGTGATGAATCTC
GACAAGCCGGCGAATCCTTCCTCGCACGAGGTGGTCGCCTGGATCAAGCGGATCCTCCGATCGGAGAAAACCGGCCACAGCGGGACACTCGATCCCAAAG
TCACAGGTAACCTAATTGTTTGCATCGATAGAGCTACTCGTCTAGTTAAGTCCCAGCAAGGTGCAGGGAAAGAGTACGTCTGTGTTGCTAGGCTTCACGA
TAAGGTCCCTGATGTCGCCAAAGTCGGCAGAGCTCTGGAAACGCTGACCGGAGCCGTCTTCCAGAGGCCGCCGCTGATCTCTGCAGTCAAAAGGCAGCTC
AGAATCAGAACAGTTTACGAGAGTAAGCTTCTGGAGTATGACGTGGATAGGCATTTAGTTGTTTTCTGGATTTCCTGCGAGGCTGGTACTTATGTGAGGA
CTATGTGTGTTCATTTGGGGCTTGTTCTTGGCGTTGGTGCTCATATGCAAGAATTGAGAAGGGTTAGGTCTGGCATTTTGGGTGAGAAGGATAATATGGT
GACGATGCACGATGTTATGGATGCTCAGTGGGCTTATGATAACTATAGGGATGAATCTTACTTGAGGAGGGTGATTATGCCGTTGGAGGTGCTTTTAACT
AGCTACAAGAGGCTGGTTGTGAAGGATTCGGCTGTGAATGCAATATGCTACGGTGCGAAGCTGATGATTCCGGGGCTGTTGAGGTTCGAGAACGACGTGG
AAGTTGGGGAGGAAGTGGTTCTGATGACGACAAAGGGAGAGGCTATTGCTTTGGGGATTGCTGAAATGACTACTGCCGTTATGGCTACCTGTGATCATGG
TGTGGTCGCTAAGATCAAGAGGGTGGTTATGGATCGGGATACTTATCCGAGGAAATGGGGGTTAGGGCCGAGGGCTTCGATGAAGAAGAAGCTGATTTCG
GAGGGGAAGTTGGATAAGCATGGGAAGCCGAATGAGAATACGCCTCAGGAATGGGCAAGGAACTTGGTTTTGCCCACTGGTGGAGACTCCATGGTTGCTG
CTGCTGCAGCTACGGCTACCCCTGTTGCTGAACCGGTTGTGGAGACGAAAGTTGAGGACGAAATGGGAACTGATAAGAAGAAGAAGAAGAGCAAGCGCAA
ACACGAGGATGAGGAAATGCCTGATGCTGATGGTGAGGCTACAGCCAAGAAGGCTAAGCTTGAGAATGTGGAGGGTGAGGAAACTCCCAAGGTGAAGAAA
TCGAAAGAAGAGGACGTCGATACAACAACGGAGAAAAAGAAGAAGAAGAAGGAGAAGAAGGACAAGGAAGGTGAAGAGGCTGCTTCGCCGGTGACGGAGA
AGTCGGAGAAGAAGAAAAAGAAGAAGGAGAAGGAGAAGGCCGAGAAGGCAGCTGCAGCCATTGAAGAGGCTGATAAAAGTGAAAAGAAGAAGAAGAAGAA
GAAAAAGGACAAATGTGGTGAAGATGAATAG
AA sequence
>Lus10023565 pacid=23160591 polypeptide=Lus10023565 locus=Lus10023565.g ID=Lus10023565.BGIv1.0 annot-version=v1.0
MAEVEVSRSDKKKHKKKTGSADPETDADPMSAVAAAVNGGDYLIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLAEYVRYGVMNL
DKPANPSSHEVVAWIKRILRSEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVGRALETLTGAVFQRPPLISAVKRQL
RIRTVYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGILGEKDNMVTMHDVMDAQWAYDNYRDESYLRRVIMPLEVLLT
SYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIS
EGKLDKHGKPNENTPQEWARNLVLPTGGDSMVAAAAATATPVAEPVVETKVEDEMGTDKKKKKSKRKHEDEEMPDADGEATAKKAKLENVEGEETPKVKK
SKEEDVDTTTEKKKKKKEKKDKEGEEAASPVTEKSEKKKKKKEKEKAEKAAAAIEEADKSEKKKKKKKKDKCGEDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10023565
[exp]
0 1
AT3G11400 ATEIF3G1, EIF3G... eukaryotic translation initiat... Lus10012833
[exp]
1.4 0.9702
AT1G13190 RNA-binding (RRM/RBD/RNP motif... Lus10019147
[exp]
2.0 0.9672
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10010429
[exp]
2.2 0.9732
AT5G14050 Transducin/WD40 repeat-like su... Lus10038375
[exp]
3.0 0.9595
AT5G13780 Acyl-CoA N-acyltransferases (N... Lus10016378
[exp]
3.7 0.9603
AT5G35530 Ribosomal protein S3 family pr... Lus10030502
[exp]
4.2 0.9692
AT5G64670 Ribosomal protein L18e/L15 sup... Lus10023078
[exp]
4.9 0.9564
AT2G47790 Transducin/WD40 repeat-like su... Lus10001029
[exp]
5.1 0.9558
AT4G39880 Ribosomal protein L23/L15e fam... Lus10041700
[exp]
5.9 0.9642
AT3G01790 Ribosomal protein L13 family p... Lus10032063
[exp]
6.6 0.9476

Lus10023565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.