Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60400 50 / 3e-07 F-box/RNI-like superfamily protein (.1) AT5G02930 49 / 1e-06 F-box/RNI-like superfamily protein (.1) AT5G44950 48 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G03220 48 / 2e-06 Protein with RNI-like/FBD-like domains (.1) AT5G02910 47 / 3e-06 F-box/RNI-like superfamily protein (.1.2) AT5G02920 47 / 3e-06 F-box/RNI-like superfamily protein (.1) AT1G78840 46 / 8e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 45 / 1e-05 F-box/RNI-like superfamily protein (.1) AT5G53840 45 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 45 / 2e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027258 [exp] 170 / 2e-52 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10038967 [exp] 174 / 4e-51 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10006513 [exp] 168 / 1e-50 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 156 / 9e-46 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10014161 [exp] 154 / 3e-45 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10040452 [exp] 145 / 3e-42 AT5G02930 59 / 3e-09 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 141 / 2e-40 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 130 / 1e-36 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 129 / 3e-36 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 61 / 5e-11 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 54 / 1e-08 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 50 / 4e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 49 / 6e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 48 / 1e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 48 / 2e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 47 / 3e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 41 / 0.0004 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023567 pacid=23160616 polypeptide=Lus10023567 locus=Lus10023567.g ID=Lus10023567.BGIv1.0 annot-version=v1.0 ATGGCGAGAAGAAGCAAGAGTGTTGAGAACAGTATCGATAGACTAAGTGATGTTTATGACAGTATTTTGCATTACATCCTTTTTTCCGTCAATACTAGAT CTTCGGTTCGCAGTAACATTTTGTCTGGGAGGTGGATATCTGTATGGAAATATGTTCCCGTTCTCACTTTCCGTAAGAGCACAGCCAGAAGTGATCTGCA TTTCGAGCGGCAGGTGGTGGATCAAGTTCTTTCCCTCCGTTCTGAAAGCAGTAGCGTTAGCAGAATTACAGCCAAATTCTCCCGGCAGGAAGAACGGATG ATGAATCTGTTTGATAGGATCATTAAATACGCTGCTTCTCATGGCGTTCAAGAGCTATTCATTTGTGCTCGTGATTACCCAAGTTATGATTTGATTAGAT TAGTATGTGCTTCCCATCAAACTCTAAAAGTTCTGGAGTTGAAGCGAACCTGCATTCGAAAGATTGATGTTGGATTGTGGTCTCGTTTGCAACGGCTTAA ATCTCTTACACTGACCGTATGCTACTTTAACTTTGCTGATGCTGCACACGATGCTTTCACTAACTTCCCCAGATTGGAAACTCTAAAGCTCGAAAAATAT GTTTGTCAGAGGCTGGTAAACTAA
AA sequence Show only first row Show all	>Lus10023567 pacid=23160616 polypeptide=Lus10023567 locus=Lus10023567.g ID=Lus10023567.BGIv1.0 annot-version=v1.0 MARRSKSVENSIDRLSDVYDSILHYILFSVNTRSSVRSNILSGRWISVWKYVPVLTFRKSTARSDLHFERQVVDQVLSLRSESSSVSRITAKFSRQEERM MNLFDRIIKYAASHGVQELFICARDYPSYDLIRLVCASHQTLKVLELKRTCIRKIDVGLWSRLQRLKSLTLTVCYFNFADAAHDAFTNFPRLETLKLEKY VCQRLVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	0	1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	1.0	1.0000
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	2.4	1.0000
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	2.6	0.9998
					Lus10038463 [exp]	2.8	0.9998
					Lus10018225 [exp]	3.0	0.9993
					Lus10005830 [exp]	3.0	1.0000
AT3G14880			unknown protein		Lus10013711 [exp]	3.2	0.9990
AT3G03000			EF hand calcium-binding protei...		Lus10004539 [exp]	3.5	0.9975
					Lus10009618 [exp]	3.5	1.0000
					Lus10041024 [exp]	3.7	0.9973

Compare expression of checked genes

Lus10023567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.