Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 796 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 650 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G24550 176 / 6e-46 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24240 169 / 9e-43 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G16000 164 / 2e-42 NIK1 NSP-interacting kinase 1 (.1) AT5G53890 167 / 3e-42 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT3G58690 158 / 8e-42 Protein kinase superfamily protein (.1) AT1G73080 166 / 9e-42 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G55610 165 / 2e-41 BRL1 BRI1 like (.1.2) AT3G24540 159 / 2e-41 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040455 [exp] 1358 / 0 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010823 [exp] 669 / 0 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 171 / 6e-44 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011098 [exp] 170 / 6e-44 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10019722 [exp] 169 / 1e-42 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10032059 [exp] 166 / 5e-42 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 165 / 6e-42 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 166 / 9e-42 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023645 [exp] 163 / 1e-41 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155100 [exp] 936 / 0 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G116300 [exp] 893 / 0 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G196600 [exp] 756 / 0 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G260100 [exp] 706 / 0 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G009200 [exp] 182 / 5e-47 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.014G143100 [exp] 172 / 1e-46 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116900 [exp] 178 / 8e-46 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G139700 [exp] 174 / 2e-44 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G081300 [exp] 168 / 2e-43 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.002G240000 [exp] 167 / 4e-43 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10023570 pacid=23160475 polypeptide=Lus10023570 locus=Lus10023570.g ID=Lus10023570.BGIv1.0 annot-version=v1.0 ATGGTGGATCCAGCAAAGGCATTTGCTCTCATAGTGTTGAATCTGGTTGTGCTGTGGTTTCAGCCGACATTTCAGCAGCAGAGGCTCACCTCTGGTGTAG AGCGAGCTGCTTTGTTCCAGCTGAGGTCTGATTTGGGCATAAGGAGTAGAGAATGGCCTAGAAAGTCCGAGCCTTGTCAATCTTGGGCTGGCGTTACATG TGTCAACGGCACTGTTACTGAGATCAACATTTCTGGCTTTAGAAGGACTAGATTGGGTTCACTGAACCCACAATTTGCTGTGGAAGCACTTGCCAATTTC ACCAAGTTGACTTCTTTCAATGCTTCCAAGTTCTTGCTCCCTGGCTCAATCCCTGATTCCTTTGGTCAAATGATGGTGAGTTCTACTTCTCTCCAGATTC TTGATCTCAGCTCTTGTGATATAACGAATGCTGTTCCTTCAAGTTTAGGGGATTTGAGTAGCTTGAGCCAGCTTCATTTAGGTGGTAACCGGTTGACTGG CATTATACCTTCCAGTTTGGGTCAGTTGCTTCAGCTTTCTGTACTGAATCTCTCCAGGAATCTCTTTACCGGCTCCATACCTTCTAGCTTTGTTAACTTG GTGAATCTCACGAGTCTCGATATGTCGTCGAACTTCTTGGCTGGTTCGATCCCTCCCATTGGTGGGAGCGCGCTTCGAAGCTTGAATTTCTCCAACAATA GCTTGTCGTCTTTTCAGTTTGGGAGCCTTGTTGGATTGGTAGACCTTGATCTCACTAGCAATTCGTTGTCCGGATCCTTGCCAGTTGAGTTAAGTGGGAT GAGTAGTCTAAAAAGCTTGCTGCTTGGTAACAACTTGTTTGGTGGACCTTTGCCATCGGGTTTGTTTGTTGCCAATCAAACTCAGTTGCAGAATGTGGTT CTGAGCAACAATGATTTCACCGGTTCTGTTCCGGGGGAATTGCTGTCGATTCCTGGATTACGGTTGTTGGATATATCCAGTAACAACTTTACCGGGATGC TCTTGGATAGTAGTAACTCGAATGCGAATGCGAACACTACTGCAGCAGTACTGAACATTTCTGGAAACCAGTTCTATGGAGGTCTTGGACCTGCGCTGAG AAGGTTCAGTTTTGTTGACCTGTCTGGGAACTATTTTCAAGGACCGGTTCCTAACTATGTGATTAGCAATGCATCTCTTGGTAGAAACTGTCTTCGTAAT GTCACGGATCAGAAGAGCTTGTTTGACTGTTCGTCGTTTTACTCCAGTCTCGGGTTGACTTTCGATAATTTTGGACTGCCGAATTCGACTCAACCTGATG TTAGGAAGAAGAGCAAGAGAAACCTTATCATATTGGTAAGTGTCCTCGGAGGGATCGGACTCTTGCTTTTGATATTTTTTGTTGTAGTTTTGGTGTTTTG CTTGCGTAAGAGGGGCACTTCGAATCAAAGAGGGGTAGCTGTTGAACCGGCTCCAACAGGGACAGGGATGGTTCCACCGCCTCCGGAGGCATCGATTAAC TTCTCGATATTGGGAGATACGTTCACGTATCAGCAGCTGCTTCAAGCTACAGGTGAATTCAACGATGCAAACCTCATCAAACGTGGCCACTCCGGAGATA TCTTCCGAGGGATATTGGAGAACGGAACCCTCGTGGCGATAAAAAGGATTGATCTTGGCGCGATCAAGAAGGAATCGTATCTGGTGGAGCTTGATTTCTT CAGTAAAGTTGCGCATGCTAAAGTGGTTCCACTTTTGGGACATTGCTTAGAGAATGAGAATGAGAAGTTGTTGGTCTACAAGTACATGCCGAATGGGGAT TTGGCGAGTTCGTTGTTCAGGAAAACTAGCTCGGAAGATGATACCTTGAAGTCGTTGGATTGGATTACGAGGTTGAAAATCGCCATCGGTGCTGCAGAAG CTCTCTCTTGCCTGCATCATGAATGTACACCGCCCATAGTGCACAGAGATATTCAAGCGAGCAGCATATTACTCGACGACAAATTCGAAGTCAGGTTAGG GAGTTTGAGTGAGGTTTGTGCTCAAGAAGGGGATGCTCATCAAAGCAGGATCACCAGGTTACTGCGATTGCCGTCTTCAGATCAAGGAACTTCCGCTCAA CCGTCAGCTACGTGCACCTACGACGTGTACTGCTTCGGCAAGGTCCTCCTCGAGCTAGTGACAGGAAACCTCGGCATCAGCGCAGCCAACGAGGCCCAAC TGAAAGAATATCTTGACCAGATCATACCGCACATCAGCATGTACGAGAAGGAACTCGTGGTCAAAATAGTGGACCCGTCTCTAATGATCGATGAAGACCT GCTGGAGGAAGTTTGGGCTATGGCCATCGTAGCAACGTCGTGTCTGAATCCGAAACCCTCGAGGAGGCCGCTAATGAGATACATCCTCAAGGCGTTGGAG AATCCTCTCAAAGTAGTGAGGGAAGAAGCCGTGGATTCATCAGCAAGGCTTAGGACAACTTCGTCTCGAGGATCGTGGAATGCTGCCGTGTTTAGTAGCT GGCGACAGTCCTCCGATGTGACAGTGGTCCAGCCCGGACAGGCTGGTGGGGTCGGTTCGAGCAGCCGGCCTGAAGGGGTAGGAGGAGGGAGTAGTAGTCT TAAACAGTCAGGGACATCGAGTGGTGGGGGGCGAAACGGGAGCGGTTCTTCGTCTTCACATAGGCGGGGTTCGAGGGATATCTTTCCAGAACCAGGTTAT GAGCAAGATGTAGAGAGACAACTACAACACGATTAG
AA sequence Show only first row Show all	>Lus10023570 pacid=23160475 polypeptide=Lus10023570 locus=Lus10023570.g ID=Lus10023570.BGIv1.0 annot-version=v1.0 MVDPAKAFALIVLNLVVLWFQPTFQQQRLTSGVERAALFQLRSDLGIRSREWPRKSEPCQSWAGVTCVNGTVTEINISGFRRTRLGSLNPQFAVEALANF TKLTSFNASKFLLPGSIPDSFGQMMVSSTSLQILDLSSCDITNAVPSSLGDLSSLSQLHLGGNRLTGIIPSSLGQLLQLSVLNLSRNLFTGSIPSSFVNL VNLTSLDMSSNFLAGSIPPIGGSALRSLNFSNNSLSSFQFGSLVGLVDLDLTSNSLSGSLPVELSGMSSLKSLLLGNNLFGGPLPSGLFVANQTQLQNVV LSNNDFTGSVPGELLSIPGLRLLDISSNNFTGMLLDSSNSNANANTTAAVLNISGNQFYGGLGPALRRFSFVDLSGNYFQGPVPNYVISNASLGRNCLRN VTDQKSLFDCSSFYSSLGLTFDNFGLPNSTQPDVRKKSKRNLIILVSVLGGIGLLLLIFFVVVLVFCLRKRGTSNQRGVAVEPAPTGTGMVPPPPEASIN FSILGDTFTYQQLLQATGEFNDANLIKRGHSGDIFRGILENGTLVAIKRIDLGAIKKESYLVELDFFSKVAHAKVVPLLGHCLENENEKLLVYKYMPNGD LASSLFRKTSSEDDTLKSLDWITRLKIAIGAAEALSCLHHECTPPIVHRDIQASSILLDDKFEVRLGSLSEVCAQEGDAHQSRITRLLRLPSSDQGTSAQ PSATCTYDVYCFGKVLLELVTGNLGISAANEAQLKEYLDQIIPHISMYEKELVVKIVDPSLMIDEDLLEEVWAMAIVATSCLNPKPSRRPLMRYILKALE NPLKVVREEAVDSSARLRTTSSRGSWNAAVFSSWRQSSDVTVVQPGQAGGVGSSSRPEGVGGGSSSLKQSGTSSGGGRNGSGSSSSHRRGSRDIFPEPGY EQDVERQLQHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	5.6	0.9371
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	9.1	0.9349
					Lus10023559 [exp]	9.4	0.9260
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	9.4	0.9128
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	9.5	0.9267
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10028623 [exp]	9.8	0.9034
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Lus10020163 [exp]	15.5	0.8762
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	17.1	0.9168
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	17.3	0.9181
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	18.6	0.9105

Compare expression of checked genes

Lus10023570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.