Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42250 358 / 4e-121 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 325 / 3e-108 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 321 / 2e-106 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 313 / 2e-103 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 241 / 2e-75 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G64710 240 / 8e-75 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 238 / 3e-74 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G24760 237 / 5e-74 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G32780 221 / 1e-67 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G55125 114 / 6e-31 Ribosomal protein L31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040457 [exp] 563 / 0 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 326 / 3e-108 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 325 / 8e-108 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10005651 [exp] 317 / 4e-105 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10000624 [exp] 317 / 1e-104 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10029759 [exp] 235 / 4e-73 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 235 / 5e-73 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 234 / 9e-73 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 233 / 2e-72 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013400 [exp] 394 / 5e-135 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.005G060000 [exp] 247 / 1e-77 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 245 / 5e-77 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 242 / 6e-76 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 241 / 2e-75 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 240 / 3e-75 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 239 / 6e-75 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 239 / 1e-74 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.005G060300 [exp] 239 / 1e-74 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.004G067000 [exp] 239 / 1e-74 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0296 [flax] [poplar] PF01197 [flax] [poplar] Ribosomal_L31 Ribosomal protein L31 CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023572 pacid=23160601 polypeptide=Lus10023572 locus=Lus10023572.g ID=Lus10023572.BGIv1.0 annot-version=v1.0 ATGGATTCACCGGCGGCGAGATTCCCAACGGCAGGCAAGCCGATCAGATGCAAAGCTGCGGTTTGCCGGGAAGCAGGGGAGCCGTTGGTGATAGAGGAAG TAATGGTGGATCCGCCGCGGGTTCGGGAAGCTCGGATCCGGGTCATCTGTACGTCTGTTTGTAACACGGATGTTAGTTTCTGGAGGATGAAGGATTCCCC TGGTGGCAATTTCCCCATAATCCTTGGTCACGAAGGATTTGGGGTCGTGGAGAGCGTGGGAGAGGGCGTGGAAGAAATGAAGCAAGGGGACAGACTGATC CCAGTATTCCTTCCGGACTGCAGAGATCAATGTGCGGATTGTAGATCGAGCAAGAGTAACTTGTGCTCCAAGTTACCGTTCAAGATCTCGCCGTCGATGC CGAGAGATGACACGAGCCGATTCAGAGACCTGGAAGGAAATTTGATTCACCATTTCCTCTACGTGTCTAGCTTCAGTGAATATACCGTCATCGATGTCGC CCATCTCACCAAGGTTGATGAATCGTCCCTTGCGGTGGCCAATAGAGCTTGCCTCCTCACCTGCGGCATCTCTGCAGGTATTGGAGCAACTTGGAGAGCT GCAGAAGTGGATGAAGGATCCACTGTTGCAATCTTTGGCTTGGGCACAATTGGAATGGCTGTTGCTGAAGGAGCAAGACTCCGTGGCGCTGGCCGAATCA TCGGGGTCGATACAAACCCAGAAAGGTTCGAAATCGGGAAGAAGTTTGGCGTAAAGGAGTTCGTCAACCCTGCTAGCAACGGAAACAAGCCGTTAAGTCA AGTGATCAAGGAGATGACTGACGGAGGAGCGGACTATTGTTTCGAATGTGCCGGGTCTCCGGTTTTAATGGAGCAAGCCTATGCTTCGGCTCGCAAGGGA TGGGGGAAGACGGTTGTGTTGGGCGTTGGCGGGGAAGGTTCAGAAGTGAAATTGAAATGCATGGAAGTCCTTCAGAGTGGGAAGACACTCACCGGCGCGC TCTTTGGCGGGCTAAAGCCGAAACCCGACATCCCAATCCTGCTCAAACGTTACATGGACGAGTTCCCACTGTCTGTGAAATCATCGAACCCTTTCTCCGA CGGCCTAAGCTTCTTCAGTCCCTCCCGTAATCCGTCCGCCGCAAATCACCAGATTGATTGCAGAATGAAGAAAGGAGCACACCCACAAATGCAATGGATA TCCTATGTGACCCAGAGCGGCAGACTGATGAATGTTATGATGACCAAAATACACAACACTGGTAAAGTCTACCACTTCAGAGCAAAGCGCCAAATGGCTG AAAGTCTTGGCCAAATTGCTAAGTTCAAGCGTCGCTACGGTGGTCAGGACGAGAACCAGGAAGAAGCTGACAAAAAGTAA
AA sequence Show only first row Show all	>Lus10023572 pacid=23160601 polypeptide=Lus10023572 locus=Lus10023572.g ID=Lus10023572.BGIv1.0 annot-version=v1.0 MDSPAARFPTAGKPIRCKAAVCREAGEPLVIEEVMVDPPRVREARIRVICTSVCNTDVSFWRMKDSPGGNFPIILGHEGFGVVESVGEGVEEMKQGDRLI PVFLPDCRDQCADCRSSKSNLCSKLPFKISPSMPRDDTSRFRDLEGNLIHHFLYVSSFSEYTVIDVAHLTKVDESSLAVANRACLLTCGISAGIGATWRA AEVDEGSTVAIFGLGTIGMAVAEGARLRGAGRIIGVDTNPERFEIGKKFGVKEFVNPASNGNKPLSQVIKEMTDGGADYCFECAGSPVLMEQAYASARKG WGKTVVLGVGGEGSEVKLKCMEVLQSGKTLTGALFGGLKPKPDIPILLKRYMDEFPLSVKSSNPFSDGLSFFSPSRNPSAANHQIDCRMKKGAHPQMQWI SYVTQSGRLMNVMMTKIHNTGKVYHFRAKRQMAESLGQIAKFKRRYGGQDENQEEADKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10023572 [exp]	0	1
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	7.7	0.7709
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	8.9	0.7576
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037910 [exp]	11.8	0.7367
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	14.5	0.7509
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	14.5	0.7960
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	20.1	0.7298
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10036567 [exp]	24.7	0.7582
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	25.0	0.7604
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	27.7	0.7491
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	28.1	0.7521

Compare expression of checked genes

Lus10023572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.