Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 70 / 1e-12 BTB/POZ domain-containing protein (.1) AT5G60050 68 / 7e-12 BTB/POZ domain-containing protein (.1) AT2G13690 61 / 2e-09 PRLI-interacting factor, putative (.1) AT3G50780 54 / 1e-07 unknown protein AT3G05675 51 / 1e-06 BTB/POZ domain-containing protein (.1.2) AT3G19920 44 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040458 [exp] 863 / 0 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 90 / 1e-18 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 87 / 6e-18 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 75 / 4e-14 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 73 / 7e-14 AT3G50780 408 / 1e-140 unknown protein Lus10038475 [exp] 70 / 2e-12 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 69 / 5e-12 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 67 / 2e-11 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10013580 [exp] 57 / 3e-08 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G154600 [exp] 551 / 0 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 82 / 2e-16 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 82 / 3e-16 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 74 / 7e-14 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 69 / 4e-12 AT3G50780 654 / 0.0 unknown protein Potri.005G058700 [exp] 68 / 9e-12 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.003G131000 [exp] 67 / 1e-11 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G109300 [exp] 67 / 2e-11 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.006G202900 [exp] 50 / 3e-06 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 49 / 6e-06 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023573 pacid=23160492 polypeptide=Lus10023573 locus=Lus10023573.g ID=Lus10023573.BGIv1.0 annot-version=v1.0 ATGTTCCCGATTAACCCTAAGAAACGGCAGCGCACGGCCCCCCCCCCCCGCCAATTCGCCGCCGCTCGCGTCTCGTCCACCTCAGCCCTCGTCGAAACCC TGTCGGACAGAACAATCAGCGAAACGTCTCAGAAGATCCGTCGAACGTCCTCTCATCCTCACCTCCTATCACCGTCTTCTTGTTCTTCTTCAACCAACTC CATTATCTCGTTTAATGATCCCTCCACCGCAGATGTGCTGCTCCTCCTGTACGTCGACCCCACAGCCCTCTCCATCGGCGACGACGCTTCTAGTTCCGGC TCTTCTTGTATCATCGATGAGATGTCGGACGTCCAGATCTACCTCCATTCCGACGTCCTCCGCCGCGCGAAGTATTTCTCGGCCCTGTTATCCGATCGTT GGCAGCGGAACGATGGCGTTGAGAAGGGATCGCATCACGACGACGGTGTCGATTCCGTTGCCGAGGTTAGGCCGAAGCACCTGAAGCTCGGCGTTCCTCC TAGACCTGGCTCGATCGATCTCAGGTTAGCTGTAATGGAACTTCTATACACGAACGATTTCCCGTCGGTGATAACATCGGTCTCGGCCGCACTTGATCTA TTACCTGTGGCGTTGGAGTTATTGTTCGAGGATTGCGTCTCCAACTGCGTGCGATTCCTTGAAGCGGTGCCGTGGAACGAAGAGGAAGAAATGCGAGTAC TGCAGCTGGTTCCGTTCCTAAGCGAGGACGAATCTAAAGATCTCCTAGCCAGACTTTCCCCGGCGAAGGAGGATTCCTGCGAGGAAATGCTTCAAGGTTT GATCTCCGCCGCTGCAACCAACAACCAGCCAAACATGGCCTACGTGAAGGCGTTCGTGGCGAAGCTATTGAGGGATTTCTCTTCGAGGAACGCTGCTAGG ACAGTATTGGAGAAGGCATTCCAGACGAGCTTGAAGGTTGTGAAGGAGTCGTTGGAGAAGTACTCAAGCCCTGATGTCAGAGGAGACCACAACGAGATAG AGGCCATACAGCGGTTGAATCTGCACACGGCCATGACCATTGGGAAGCAGCTGCTGTGGCTAGTGGAGAGGATGATCGAGCTGAGAGTAGCGGATAATGC TGTGAAGGAATGGAGTGAGCAGTCTGCTTTTACAGCTGATTTGCAGAGGGCTTTTAGGGATGATGTTTGGAGGAATATTGTTCCCGGGCTTCCTGCCATT ATGATCCGCTGCACTTACAAGCTTGCCTCTGCTGTTGCTACTGGAACCATTCTTGCTGCTAGACAGGTGAGGATGAAGCTGGTAAGCGACTGGCTTCCAG TTCTGATAATATGCAAAGACAAGGTCTCACCAATGTCGCCTGGCCACAAAGCACTGTATCTGGAGCTTGAGGAGACATTCGTAAGAATTATCTCAACCCT TCCAATGTCAGATTCACAGGAACTGCTTCAGCAGTGCCTCAGCTTGTCGACTCGTAACGTTGATGATTGCCCCCACTTGATCTCCGCTTTCAACACTTGG TTCCGCCGCGCAACTCGCCCTCCACCTGAAGATCAGCCTCGTCAGCAGATCGGTGAACAGTAG
AA sequence Show only first row Show all	>Lus10023573 pacid=23160492 polypeptide=Lus10023573 locus=Lus10023573.g ID=Lus10023573.BGIv1.0 annot-version=v1.0 MFPINPKKRQRTAPPPRQFAAARVSSTSALVETLSDRTISETSQKIRRTSSHPHLLSPSSCSSSTNSIISFNDPSTADVLLLLYVDPTALSIGDDASSSG SSCIIDEMSDVQIYLHSDVLRRAKYFSALLSDRWQRNDGVEKGSHHDDGVDSVAEVRPKHLKLGVPPRPGSIDLRLAVMELLYTNDFPSVITSVSAALDL LPVALELLFEDCVSNCVRFLEAVPWNEEEEMRVLQLVPFLSEDESKDLLARLSPAKEDSCEEMLQGLISAAATNNQPNMAYVKAFVAKLLRDFSSRNAAR TVLEKAFQTSLKVVKESLEKYSSPDVRGDHNEIEAIQRLNLHTAMTIGKQLLWLVERMIELRVADNAVKEWSEQSAFTADLQRAFRDDVWRNIVPGLPAI MIRCTYKLASAVATGTILAARQVRMKLVSDWLPVLIICKDKVSPMSPGHKALYLELEETFVRIISTLPMSDSQELLQQCLSLSTRNVDDCPHLISAFNTW FRRATRPPPEDQPRQQIGEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	0	1
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	1.0	0.8450
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	4.6	0.7926
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	5.7	0.8127
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	7.3	0.7886
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	7.7	0.7990
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	7.7	0.7613
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	8.5	0.7895
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	10.4	0.8030
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	14.5	0.7289
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	16.7	0.7987

Compare expression of checked genes

Lus10023573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.