Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34500 520 / 0 Protein kinase superfamily protein (.1) AT1G01540 452 / 1e-157 Protein kinase superfamily protein (.1.2) AT4G01330 433 / 7e-150 Protein kinase superfamily protein (.1.2) AT4G02630 417 / 4e-143 Protein kinase superfamily protein (.1) AT1G56720 398 / 6e-136 Protein kinase superfamily protein (.1.2.3) AT3G59110 397 / 3e-135 Protein kinase superfamily protein (.1) AT1G09440 393 / 4e-134 Protein kinase superfamily protein (.1) AT2G42960 386 / 3e-131 Protein kinase superfamily protein (.1) AT5G18500 384 / 1e-130 Protein kinase superfamily protein (.1.2) AT3G17420 383 / 2e-130 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040459 [exp] 739 / 0 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 573 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10026338 [exp] 449 / 3e-152 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10018722 [exp] 425 / 4e-146 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 424 / 2e-145 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 420 / 1e-144 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 420 / 1e-144 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041593 [exp] 420 / 4e-144 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 413 / 1e-143 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G154000 [exp] 545 / 0 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 538 / 0 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 438 / 1e-151 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 431 / 2e-148 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 407 / 2e-139 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 407 / 4e-139 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 406 / 8e-139 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 403 / 1e-137 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 392 / 1e-133 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G001600 [exp] 387 / 5e-132 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023574 pacid=23160587 polypeptide=Lus10023574 locus=Lus10023574.g ID=Lus10023574.BGIv1.0 annot-version=v1.0 ATGCCGGCCGAACGAGCAAACGCCGGCAATGAGCTCACTTCTTCCTCGCCGACGTTTCTAAACCTCAAGCTCTACATCCTCATCGGCATCTTCTCCGCCT CCCTCATCTTACTCTGCCTCGCCGTATTCCTCTGCTTCCGGCTTAACCACCTCTCCCGGCGGCGCGTGAAGCACAGCTCCGGATCCATCCCTTTAGTACT CTCCGAGATCAGCACCAACAGTACCACGAACAAGGAATCCATGGATCTCGAAGCTGCAAACGGCGACGTGGGTAAGCTCGCCTGTACCGAATCCCCCGTG AAGAATCAGGATGAAGTTAAAGTGCCCGTCGGGGGAAATGAGTTGACGGCGGTGGAGGGATGGGGGAGATGGTACGGGTTAAAGGAGCTGGAGACAGCGA CGAAGGGGTTTGCGGCGGAGAACGTTGTAGGAGAAGGAGGATACGGCGTCGTTTACAGGGGAGTGTTGGCTGATGGCTCTGTTGTCGCCGTCAAGAATCT CCTCAACAACAAAGGACAGGCAGAGAAGGAGTTCGAGGTTGAAGTAGAAGCCATTGGCAAAGTACGGCACAAGAACTTGGTTGGCCTGATTGGCTACTGT GTTAATGGCCCTAGCAGGATGCTGGTCTACGAATTCGTCGACAATGGCAACTTGGAGCAATGGCTGCACGGAGTTGATGAACCCATTAGCCCCTTAACAT GGGACATCCGGATGAAGATCGCCATTGGCACTGCCAAAGCGCTAGCTTATCTACACGAAGGGCTAGAGCCAAAGGTGGTGCACCGTGACGTGAAGTCGAG CAACATCCTCCTCGACCGTAAGTGGAACGCTAAAGTCTCCGACTTTGGACTGGCCAAGCTTTTGGGAGGCGAAGCTAGCTACGTGACTACTCGAGTCATG GGAACATTCGGATACGTTTCTCCCGACTATGCAAGCACGGGAATGCTCAACGAAGGGAGTGACGTATACAGTTTTGGAGTTCTTCTCATCGAGATCATCA CAGGGAGGAGCCCTATCGATTACTCCAAACCGGCTAGCGAGATGAACTTGGTGGACTGGTTCAAGGGAATGGTGGCTAGGCGTCGCGGAGAAGAGCTAGT TGACCCTTCGATTGAAGTTCAGCCATCCCCAAGAGCTCTGAAAAGAGCCTTGCTGGTTTGCCTTAGGTGTATAGACTTGGATGCCTGCAAAAGACCAAAG ATGGGGCAGATTGTTCATATGCTTGAAAGCTAG
AA sequence Show only first row Show all	>Lus10023574 pacid=23160587 polypeptide=Lus10023574 locus=Lus10023574.g ID=Lus10023574.BGIv1.0 annot-version=v1.0 MPAERANAGNELTSSSPTFLNLKLYILIGIFSASLILLCLAVFLCFRLNHLSRRRVKHSSGSIPLVLSEISTNSTTNKESMDLEAANGDVGKLACTESPV KNQDEVKVPVGGNELTAVEGWGRWYGLKELETATKGFAAENVVGEGGYGVVYRGVLADGSVVAVKNLLNNKGQAEKEFEVEVEAIGKVRHKNLVGLIGYC VNGPSRMLVYEFVDNGNLEQWLHGVDEPISPLTWDIRMKIAIGTAKALAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLGGEASYVTTRVM GTFGYVSPDYASTGMLNEGSDVYSFGVLLIEIITGRSPIDYSKPASEMNLVDWFKGMVARRRGEELVDPSIEVQPSPRALKRALLVCLRCIDLDACKRPK MGQIVHMLES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34500			Protein kinase superfamily pro...		Lus10023574 [exp]	0	1
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	1.4	0.8883
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	2.0	0.8565
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	11.8	0.8148
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	17.5	0.8043
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	23.7	0.8563
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	27.0	0.7953
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	29.9	0.8535
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	31.2	0.8543
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10024601 [exp]	31.4	0.8489
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	32.2	0.7617

Compare expression of checked genes

Lus10023574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.