Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34490 615 / 0 ATCAP1 cyclase associated protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040460 [exp] 808 / 0 AT4G34490 642 / 0.0 cyclase associated protein 1 (.1) Lus10026338 [exp] 694 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10042324 [exp] 691 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115500 [exp] 677 / 0 AT4G34490 665 / 0.0 cyclase associated protein 1 (.1) Potri.004G153900 [exp] 664 / 0 AT4G34490 659 / 0.0 cyclase associated protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF08603 [flax] [poplar] CAP_C Adenylate cyclase associated (CAP) C terminal CL0391 [flax] [poplar] PF01213 [flax] [poplar] CAP_N Adenylate cyclase associated (CAP) N terminal
Representative CDS sequence Show only first row Show all	>Lus10023575 pacid=23160484 polypeptide=Lus10023575 locus=Lus10023575.g ID=Lus10023575.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGCTGATCGCTAGGCTGGAATCGGCCGTGTCGCGGTTGGAATCGCTGTCTTCTTCTCCCGGCTTCACATCCCGGGACATCGGCGGTGGAG ATTTCGTTTCCTCGTCTCCCGATCAGTCGATTCTGGCATTTGACGATCTGATCCGCGAGTCATTCGGTAGGGTTTCCGCCGCTGCGGAGAAGATCGGGGG ACAGGTCCTGGAGGTTACCAAGGTAATTGGTCAGGCTCTTAATGTCGAGAAGGATCTTCTTGCAATGATCAAGCAAACCAAGAAACCTGACATGGCGGGA ATGGGTGAATTCATGAGGCCTCTAAACGAGGTGATTGGGGAAGCGAATGCGATGACGGAAGGGAGGAGATCCGATTTCTTCAACCACTTCAAGACTGCTG CCGATAGTCTTTCGGCTTTAGTGTGGATTGCTTATACTGGCAAAGATTGTGGTATGAGTATGCCCATTGCACACGTAGAAGAGAGCTGGCAGATGGCTGA ATTCTACAATAACAAGATTCTTGTGGAGTACAAGAGCAAAGACCCAAATCATGTCGAATGGGCGAAAGCTGTGAAGGAACTCTACTTGCCGGGTCTGAAG GATTATGTTAAGAGCTACTATCCGTTGGGTCCGGTATGGTGTGCTACTGGAAGATCTGTAGCCTCTAGGCCAAGTGCTCCTGCTCCTCCACCAGCTTCTC AATTCAGCGCTGAATGTTCGAAAGCTTCATCATCAAAGCCAAAGGCGGGCATGGATGCTGTGTTCCAAGAGATCAATTCTGGGAAACCTGTAACTGCAGG TCTGAGGAAGGTCACAAACGATATGAAATCCAAGAATCGCGCTGATAGGACTGGTGTCGTTGCTACCACTGAGAAAGGAGCTGCTTCTTCATCTTCGTCT TCTTCAAAGAAGACGGGACCTCCTAAATTTGAGCTTCAAATGGGTCGGAAGTGGGTTGTTGAGAATCAGATTGGAAACAAGAATATAGTCATTAGCGACT GTGATGCAAAGCAATCAGTGTATATGTTCGGATGCAAAGATTCTGTTCTGCAAATTCAAGGAAAAGTGAACAACATAACCGTTGACAAGTGTACTAAGAC CGGGGTGGTATTTTCGGATGTCGTAGCTGCTTGCGAGGTTGTAAATTGCAGCGGCGTTGAAGTGCAATGCCAGGGTTCAGCTCCAACCATTTCAGTGGAC AATACTTCTGGCTGTCAGTTGTATCTGAGCAAGAACTCCCTAGAGACGTCCATAACCACCGCAAAGTCTAGCGAGATCAATGTGGTGGTGCCTGGTGCTG AGCCTGATGGTGACCTGGTAGAGCATGCTTTGCCACAGCAGTATGTTCATCTGTTCAAGGACGGCAAGTTCGAAACGACGCCGGTTTCCCACTCTGGAGG GTAA
AA sequence Show only first row Show all	>Lus10023575 pacid=23160484 polypeptide=Lus10023575 locus=Lus10023575.g ID=Lus10023575.BGIv1.0 annot-version=v1.0 MEEKLIARLESAVSRLESLSSSPGFTSRDIGGGDFVSSSPDQSILAFDDLIRESFGRVSAAAEKIGGQVLEVTKVIGQALNVEKDLLAMIKQTKKPDMAG MGEFMRPLNEVIGEANAMTEGRRSDFFNHFKTAADSLSALVWIAYTGKDCGMSMPIAHVEESWQMAEFYNNKILVEYKSKDPNHVEWAKAVKELYLPGLK DYVKSYYPLGPVWCATGRSVASRPSAPAPPPASQFSAECSKASSSKPKAGMDAVFQEINSGKPVTAGLRKVTNDMKSKNRADRTGVVATTEKGAASSSSS SSKKTGPPKFELQMGRKWVVENQIGNKNIVISDCDAKQSVYMFGCKDSVLQIQGKVNNITVDKCTKTGVVFSDVVAACEVVNCSGVEVQCQGSAPTISVD NTSGCQLYLSKNSLETSITTAKSSEINVVVPGAEPDGDLVEHALPQQYVHLFKDGKFETTPVSHSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10023575 [exp]	0	1
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	3.5	0.8746
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	6.3	0.8594
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	13.0	0.8463
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	16.7	0.8565
AT1G09645			unknown protein		Lus10037343 [exp]	21.6	0.8179
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	22.4	0.8623
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	34.6	0.8219
AT1G72180			Leucine-rich receptor-like pro...		Lus10009476 [exp]	35.4	0.8584
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	37.0	0.8302
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	37.0	0.8508

Compare expression of checked genes

Lus10023575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.