Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16230 627 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 610 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 486 / 2e-170 Glycosyl hydrolase family 17 protein (.1) AT5G24318 401 / 9e-137 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 356 / 5e-119 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 347 / 9e-116 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 341 / 5e-113 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 326 / 2e-107 O-Glycosyl hydrolases family 17 protein (.1) AT1G32860 314 / 3e-103 Glycosyl hydrolase superfamily protein (.1) AT5G56590 312 / 2e-101 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040461 [exp] 826 / 0 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 614 / 0 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032719 [exp] 458 / 2e-160 AT2G16230 430 / 4e-149 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 387 / 2e-130 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 387 / 2e-130 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 377 / 2e-127 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 368 / 8e-124 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 358 / 5e-120 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10015151 [exp] 350 / 1e-116 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115400 [exp] 707 / 0 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 706 / 0 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 674 / 0 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 551 / 0 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 548 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 546 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 542 / 0 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 538 / 0 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 532 / 0 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 530 / 0 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10023576 pacid=23160532 polypeptide=Lus10023576 locus=Lus10023576.g ID=Lus10023576.BGIv1.0 annot-version=v1.0 ATGCTAATTCCTTCTCTCTCCGCCGCCTTCCTCCTCCTCCTCCTCCACCACCACCATTTCCCTTTCGCAAATTCCCAATCGTTCATCGGAGTCAACTACG GTCAAGTTGCCGACAACCTCCCGCCGCCGCCTGCCACCGCTAAGCTCCTCCAGACAACCACCGTCCAGAAGGTCCGCCTCTACGGCGCCGATCCGGCGAT AATCAAGTCCCTCGCCAACACCGGGATTGGAATCGTGATCGGAGCAGCCAACGGCGACATCCCGTCGCTCGCCGGCGATCCCAACTTTGCGGGCCAGTGG GTCTACACGAACGTCCTCGCCTTCTATCCGGCCAGCAACATCGTCCTTGTCACCGTCGGCAACGAGGTCCTCCTCTCCGGCGACCAGGGCCTCGTCTCTC AGCTCCTCCCGGCGATGCAGAACGTCCAAAACGCTCTCAACGCGGCGTCGGTCGGCGGGAAGGTTAAGGTCTCCACGGTCCACTCGATGGCGGTTCTGGG CCGGTCCGACCCGCCGTCTTCGGGCTCGTTCGACCCGAAGTTTGGAGACACGATGAAGGCTCTGCTGCAGTTCCAGAGAGCGGTCGGGTCACCGATTGCT GTTAATCCGTACCCGTTCTTCGCGTACCAGAGTGACCCGAGGCCGGAAACGCTGGCGTTTTGTCTGTTTCAGCCCAACGCGGGGCGAGTCGACTCGGGGA CTGGGATCAAGTACATGAACATGTTCGATGCTCAGGTTGATGCAGTAAGATCGGCTCTGAATGCAATGGGGTTCAAGGACATCGACATTCTTGTCGCGGA GACGGGCTGGCCCTACCGTGGGGACCCGAATGAAGTTGGACCGAGTATCGAAAATGCCAGAGCCTACAACGGCAACTTGATTGCTCACCTTAGGTCCATG GCTGGAACTCCGTTGATGCCGGGGAAGTCAGTTGACACTTTCCTCTTCGCTCTGTTTGACGAAGACCTTAAACCGGGACCTTCCTCCGAACGTAGCTTCG GACTGTTCAAGCCTGATCTTTCCATGACTTATGATGTTGGTCTGTCCAAGACCACCAGCCCACAGAGTCCACCGCCATCAGTATCGTCGAAAACGCCATC TATGCCACAGGCCACGCAGTGGTGCGTGTCGAAGCCAGGTGTGTCCGGGGCCCAGTTGCAGGCGAGCCTGGACTATGCGTGCGGCCAAGGAGTAGACTGC ACCCCTTTGCTCCCAGGAGGAGCTTGTTTCGAGCCGAACACTGTAGAGTCTCATGCTGCTTATGCAATGAACCTCTACTTCCAGAGATCGGAGAAGCGTC CTTGGAACTGCGATTTCTCGCAGACTGCTGCCTTGACTTCCAAAAACCCTAGCTATAACGGATGCAATTACCCTGGAGGTAGTACATGA
AA sequence Show only first row Show all	>Lus10023576 pacid=23160532 polypeptide=Lus10023576 locus=Lus10023576.g ID=Lus10023576.BGIv1.0 annot-version=v1.0 MLIPSLSAAFLLLLLHHHHFPFANSQSFIGVNYGQVADNLPPPPATAKLLQTTTVQKVRLYGADPAIIKSLANTGIGIVIGAANGDIPSLAGDPNFAGQW VYTNVLAFYPASNIVLVTVGNEVLLSGDQGLVSQLLPAMQNVQNALNAASVGGKVKVSTVHSMAVLGRSDPPSSGSFDPKFGDTMKALLQFQRAVGSPIA VNPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVRSALNAMGFKDIDILVAETGWPYRGDPNEVGPSIENARAYNGNLIAHLRSM AGTPLMPGKSVDTFLFALFDEDLKPGPSSERSFGLFKPDLSMTYDVGLSKTTSPQSPPPSVSSKTPSMPQATQWCVSKPGVSGAQLQASLDYACGQGVDC TPLLPGGACFEPNTVESHAAYAMNLYFQRSEKRPWNCDFSQTAALTSKNPSYNGCNYPGGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	0	1
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	1.7	0.9041
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	2.8	0.9234
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	4.2	0.9117
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	8.0	0.9037
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	8.9	0.9014
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	9.2	0.8567
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	11.3	0.8720
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	12.0	0.8751
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	12.4	0.8825
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	15.9	0.8896

Compare expression of checked genes

Lus10023576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.