Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53500 51 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 50 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64610 48 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G02430 45 / 4e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 45 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 42 / 6e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 42 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 40 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011313 [exp] 256 / 4e-86 AT5G53500 129 / 1e-32 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012846 [exp] 123 / 9e-36 AT5G53500 74 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000387 [exp] 109 / 2e-29 AT5G02430 53 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) Lus10038684 [exp] 91 / 5e-22 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10037951 [exp] 83 / 5e-19 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10017312 [exp] 61 / 2e-11 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 61 / 2e-11 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 56 / 1e-09 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 55 / 3e-09 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G174100 [exp] 54 / 7e-09 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G144400 [exp] 53 / 1e-08 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 51 / 4e-08 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 48 / 5e-07 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 48 / 7e-07 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 46 / 2e-06 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 42 / 6e-05 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 42 / 6e-05 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G228400 [exp] 42 / 7e-05 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.011G122500 [exp] 41 / 0.0001 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023577 pacid=23160555 polypeptide=Lus10023577 locus=Lus10023577.g ID=Lus10023577.BGIv1.0 annot-version=v1.0 ATGTCTCACCATCACTTTCCCATTCCTCTCACGCTCCCGCCTAGCCGCCAAAAACAAATCAACATACCATCATCAATCCACAATGATCCCGCAAATCATC CGCCGCCGACGGCCGAGAATTCCGACGACAGTCTCTATCATCCTGCTCCATCTATTCCTCTTCTCGATACAGGGGTTTCGATGATGGAGGACAGAGCTGG GGAGGATGGTTTGTTTGCGGCGGAGGAGGAGGCGGAGACGATGGACACTAGCGGTTCGCTGGATGAATTTGACTGGAGGGACAAAGGAGCTGTAACCGAC GTCAAGATGCAGTACAATCCAGTGGATGAAGACTACTTCATCAATGGATCTATAGATGGAAAAGTTGGGGTCTGGGAAGTGTCTGGATGTCAGTTAAATC GCTTACCGACATCAGAGAAATCGTTTTATAGACATCAGAGAAATGGTTGA
AA sequence Show only first row Show all	>Lus10023577 pacid=23160555 polypeptide=Lus10023577 locus=Lus10023577.g ID=Lus10023577.BGIv1.0 annot-version=v1.0 MSHHHFPIPLTLPPSRQKQINIPSSIHNDPANHPPPTAENSDDSLYHPAPSIPLLDTGVSMMEDRAGEDGLFAAEEEAETMDTSGSLDEFDWRDKGAVTD VKMQYNPVDEDYFINGSIDGKVGVWEVSGCQLNRLPTSEKSFYRHQRNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023577 [exp]	0	1

Compare expression of checked genes

Lus10023577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.