Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 84 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 71 / 3e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 70 / 7e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 69 / 2e-14 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29670 69 / 2e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 68 / 3e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 67 / 8e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 67 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 66 / 3e-13 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G18430 64 / 9e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026647 [exp] 243 / 4e-81 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017903 [exp] 210 / 4e-70 AT4G28780 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 191 / 5e-61 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012135 [exp] 159 / 1e-49 AT1G29670 84 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011312 [exp] 159 / 1e-49 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026644 [exp] 139 / 6e-41 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026646 [exp] 110 / 2e-29 AT1G29670 72 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030410 [exp] 101 / 3e-26 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 97 / 8e-25 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130100 [exp] 77 / 2e-17 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 75 / 2e-16 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 74 / 3e-16 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G024600 [exp] 74 / 4e-16 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G180400 [exp] 72 / 1e-15 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051000 [exp] 72 / 2e-15 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.002G253400 [exp] 71 / 5e-15 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 69 / 1e-14 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 69 / 1e-14 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 69 / 2e-14 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023578 pacid=23160502 polypeptide=Lus10023578 locus=Lus10023578.g ID=Lus10023578.BGIv1.0 annot-version=v1.0 ATGTTCGGGGTCGTAGGACCGCAACAAATCGGGTGCAGTCCAATTGCTCGAGCCCGTAGCCCAACCGGGCGCTGCCGTACCAGAGCAAATTCGATTGCGG AGGCTATCCCTTCCCGATTGGCCGTAGCTATGGGCATGCTCAGAGTTACAAATCGAGATATTATTTATTCGGTCGCGAATACTTATAACATAAACAGCGA CCTCACCAACAGTCCAACACTATACGGTTTAAGGAACGTTACGGGTGCATGTTGTGGGAACGGAACGACGCTATGCGTTCCGAATTCTACTGTGTGCGAG GACCGCGATAGGTACTTGTATTGGAATCCGGCTCAACTAACCCAAAGCGGGTCGAGATTGGTTGTTGAAGCATTTTTCAGTGAAAATTTCGAGATACACG GACCCTATAAGCTTTGCACAGTTGATTAA
AA sequence Show only first row Show all	>Lus10023578 pacid=23160502 polypeptide=Lus10023578 locus=Lus10023578.g ID=Lus10023578.BGIv1.0 annot-version=v1.0 MFGVVGPQQIGCSPIARARSPTGRCRTRANSIAEAIPSRLAVAMGMLRVTNRDIIYSVANTYNINSDLTNSPTLYGLRNVTGACCGNGTTLCVPNSTVCE DRDRYLYWNPAQLTQSGSRLVVEAFFSENFEIHGPYKLCTVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	0	1
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	2.8	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	3.2	1.0000
					Lus10003763 [exp]	3.5	1.0000
					Lus10006079 [exp]	5.3	1.0000
					Lus10010414 [exp]	6.3	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	6.9	1.0000
					Lus10010663 [exp]	7.0	1.0000
					Lus10034359 [exp]	7.7	1.0000
AT1G15780			unknown protein		Lus10023978 [exp]	8.0	1.0000
AT2G41970			Protein kinase superfamily pro...		Lus10016247 [exp]	8.7	1.0000

Compare expression of checked genes

Lus10023578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.