Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34460 589 / 0 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT5G52820 93 / 2e-20 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 92 / 6e-20 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 89 / 1e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 84 / 3e-17 TAF5 TBP-associated factor 5 (.1) AT3G18130 81 / 5e-17 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G18080 79 / 3e-16 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 78 / 8e-16 RACK1B_AT receptor for activated C kinase 1B (.1) AT2G41500 79 / 1e-15 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G11160 77 / 6e-15 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040464 [exp] 715 / 0 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10042325 [exp] 674 / 0 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10026337 [exp] 637 / 0 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10029493 [exp] 92 / 3e-20 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039597 [exp] 90 / 2e-19 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10021059 [exp] 87 / 2e-18 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 87 / 2e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10017570 [exp] 85 / 4e-18 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 84 / 1e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115300 [exp] 665 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.004G153700 [exp] 658 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.005G148500 [exp] 92 / 1e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 92 / 6e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.015G041600 [exp] 86 / 1e-18 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 84 / 4e-18 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 84 / 6e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 84 / 1e-17 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.008G002300 [exp] 81 / 3e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 81 / 3e-16 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023579 pacid=23160595 polypeptide=Lus10023579 locus=Lus10023579.g ID=Lus10023579.BGIv1.0 annot-version=v1.0 ATGTCCGTCGCCGAGCTGAAGGAGCGCCACTTGGCGGCCACCGAGACCGTCAGCACTCTCAGGGAACGCTTGAAGCAGAAACGCCTCCAATTGCTTGATA CAGATGTTTATGGGTACTGCAAATCGCAGGGGAAGTCTCCTGTAACCTTCGGCCCTACCGATCTCGTCTGCTGCCGGACGCTTCAGGGGCATACTGGCAA GGTTTACTCATTGGATTGGACATCCGAAAAGAACAGGATAGTAAGTGCTTCACAAGACGGCAGATTAATAGTATGGAATGCGCTAACGAGCCAGAAAACT CACGCGATCAAGCTTCCTTGCGCGTGGGTGATGACGTGTGCCTTCTCGCCATCCGGACAGTCGGTTGCTTGTGGCGGTCTCGACAGCATCTGTTCCATCT TCAACTTGAACTCGCCGGCTGATAAGGACGGGAATTTAACTGTGTCTAGAATGCTTACCGGACACAAGGGCTATGTGTCCTGCTGCCAGTACGTTCCGGA TGAAGATGCTCACCTGATAACTGGTTCCGGAGATCATACATGCGCGTTATGGGACACTATGACTGGTCTCAGGACTTCTCTGTTCGGCGGAGAGTTTCAG TCCGGTCACACTGCTGATGTACAATGTATCTCGATCAACGGAACAAACTCAAGGATGTTTGTATCCGGTTCCTGCGACAAAACCGCTCGCCTATGGGATA CTCGAGTCGCCAGTAGAGCATCACGTACGTTTTATGGTCATGAGGCAGACGTTAACACGGTGAAGTTCTTCCCGGATGGTAACAGGTTTGCGACAGGTTC GGACGATGGCACGTGTAGGCTATTCGACATCAGGACTGGACATCAGTTGCAAGTGTACTACCAACAGCACGGAGACGAGAATGAGATACCACACGTGACG TCCATCGCGTTCTCGATATCGGGAAGACTTCTCTTTGCTAGCTACTCAAACGGTGACTGCTACGTTTGGGATACTCTACTAGCGAAGGTTGTTCTGAATT TGGGATCCCTGCAAAACTCGCACGAAGCTCGAATCAGCTGTTTGGGTTTGTCGTCTGATGGAAGCGCATTATGCACCGGAAGTTACGATACTAACCTAAA GATTTGGGCATTCGGTGGACACAGAAGAGTCGTCTGA
AA sequence Show only first row Show all	>Lus10023579 pacid=23160595 polypeptide=Lus10023579 locus=Lus10023579.g ID=Lus10023579.BGIv1.0 annot-version=v1.0 MSVAELKERHLAATETVSTLRERLKQKRLQLLDTDVYGYCKSQGKSPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKT HAIKLPCAWVMTCAFSPSGQSVACGGLDSICSIFNLNSPADKDGNLTVSRMLTGHKGYVSCCQYVPDEDAHLITGSGDHTCALWDTMTGLRTSLFGGEFQ SGHTADVQCISINGTNSRMFVSGSCDKTARLWDTRVASRASRTFYGHEADVNTVKFFPDGNRFATGSDDGTCRLFDIRTGHQLQVYYQQHGDENEIPHVT SIAFSISGRLLFASYSNGDCYVWDTLLAKVVLNLGSLQNSHEARISCLGLSSDGSALCTGSYDTNLKIWAFGGHRRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	0	1
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	14.4	0.7520
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	15.9	0.7599
					Lus10005426 [exp]	21.0	0.6648
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	22.8	0.6983
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006702 [exp]	25.8	0.6118
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	27.5	0.6372
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	29.0	0.6828
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	29.5	0.7176
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	31.0	0.7372
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	34.4	0.6792

Compare expression of checked genes

Lus10023579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.