Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34450 1420 / 0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) AT2G16200 100 / 1e-25 structural molecules (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040465 [exp] 1613 / 0 AT4G34450 1526 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10026336 [exp] 1506 / 0 AT4G34450 1528 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10042326 [exp] 1378 / 0 AT4G34450 1416 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115100 [exp] 1493 / 0 AT4G34450 1511 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Potri.004G153500 [exp] 1491 / 0 AT4G34450 1513 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF08752 [flax] [poplar] COP-gamma_platf Coatomer gamma subunit appendage platform subdomain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10023580 pacid=23160627 polypeptide=Lus10023580 locus=Lus10023580.g ID=Lus10023580.BGIv1.0 annot-version=v1.0 ATGGCTCAGCCTCTCGTAAAGAAAGACGACGATCGCGACGACGAAGCTGAATACTCACCGTTCCTGGGAATTGAGAAGGGTGCTGTTCTTCAGGAAGCAA GGGTTTTCAATGAACCCCAGCTAGATCCAAGAAGATGCTCTCAGGTTATCACAAAGCTCCTTTATCTACTGAACCAAGGAGAATCCTTCACTAAGGTTGA AGCCACAGAAGTATTCTTTTCTGTAACGAAGCTATTTCAGTCAAAAGACGTTGGGTTAAGAAGGATGCTCTATTTGATAATAAAGGAATTATCCCCGTCA TCAGATGAGGTTATTATTGTGACAAGTTCCCTCATGAAGGACATGAACAGCAAGACTGATATGTACCGGGCAAATGCTATTCGTGTACTTTGTCGGATAA CAGACGGGGTCCTATTGACTCAGATTGAGCGTTATCTGAAGCAAGCAATTGTTGACAAGAATCCAGTAGTTGCTAGTGCTGCCCTAGTCAGTGGTATCCA CTTGCTTCAGACAAATCCAGAAGTGGTGAAAAGGTGGAGTAATGAGGTTCAAGAGGCTGTGCAGTCAAGGGCAGCCCTTGTACAGTTCCATGCCCTGGCA TTGCTCCATCAGGTCATCCGCGAGTCTGCTTCTAACTTACAAACTGGGGATCGTCCGTTCTATGAATTTCTGGAAATTTGTCTTCGCCATAAGGCAGAGA TGGTCATCTTTGAAGCTGCTAGAGCAATCACAGAACTCAGCGGCGTGACAAGCCGAGAATTGACCCCAGCAATTACTGTGCTGCAGCTGTTTTTGAGCTC TTCCAAGCCAGTGTTGAGATTTGCAGCTGTTCGCACCTTGAACAAGGTTGCTATGACTCATCCTATGGCTGTCACTAACTGCAACATAGATATGGAGAGT TTAATTTCTGACCAAAACAGAAGTATCGCGACACTTGCAATCACCACTTTGCTGAAGACCGGAAATGAATCAAGTGTAGATCGTTTGATGAAGCAAATAA CAAATTTCATGTCAGATATTGCAGATGAATTTAAAATCGTAGTAGTAGAAGCCATCAGGTCTTTGTGCTTGAAGTTCCCTTTGAAATACAGATCACTGAT GAACTTCTTAAGCAACATTTTGAGGGAAGAAGGGGGTTTCGAGTATAAGAAGGCCATTGTCGATTCCATTGTCATCCTCATCAGAGATATCCCCGATGCA AAGGAAAGTGGACTGTTTCATCTGTGTGAATTTATTGAAGACTGTGAATTTACGTATCTTTCCACTCAGGTAGCTTTGATACTTCATTTTCTGGGGATTG AGGGTCCAAAGACTGCCGATCCCAGCAAGTACATACGTTACATCTACAACCGTGTACATCTCGAGAATGCTACCGTTCGGGCAGCTGCTGTGAGCACTTT GGCAAAGTTTGGTGCTATTGCGGATTCCTTGAAGCCACGCATCTTTGTCCTGTTGAGACGATGTTTATTTGATAGTGATGATGAGGTTCGTGACCGCGCA ACCCTTTATCTTAATACACTTGGTGGCGATGGAGAAGTTGTCGAAACCGATAAAAAGGTGAAGGAGTTTCTCTTTGGAGCCTTGGACATCCCACTTGTCA ACCTCGAGACAAGTTTGATAAATCATGAGGCATCGGAAGAACCTTTTGATATCAACTCTGTTCCACGAGAAGTGAAATCGCTGCCACTTGCAGAAAAGAA AGCTGCAGGCAAAAGGCAGCCAACTGGTTTGGGTGTTCTGCCACCTGGACCCCCTTCTACTCTGGATGCGTATGAAAGACTCATTTCTTCAATTCCAGAG CTTGCTAGTTTGGGCAAACTTTTTAAGTCCTCGGTACCTACGGAGCTAACAGAAGCAGAAACTGAATATGCCGTTAATGTTGTTAAGCACATTTTCGATA GGCATGTTGTGTTCCAGTACAACTGCACCAACACAATCCCAGAGCAGCTACTTGAAGATGTTACCGTGGTCGTGGACACTTCCGAGGCAGAGGAGTTCTC ATTCGTATTATCCAAGCCTTTGAGATCTCTTCCGTATGATACTCCTGGACAAACATTTGTTGTCTTCGAGAAGCCAGAGGGAGTCCCTGCAGAGGGGAAG TTTTCCAATACGCTGAGATTCATTGTTAAAGAGGTTGATCCGAGTACTGGTGAGGCAGACGAAGATGGAGTGGACGATGAATACCAATTGGAGGAGCTGG AAGTCGTGTCTGCTGATTATATGCAGAAAGTTGGTGTTGCCAACTTCAGGAACGCATGGGAAAGCTTAGATGCTGAACTCGAGCGTGTCGATGAATATGG CCTTGGCCCCAGGGAGAACTTGGTTGAAGCTGTTAATGCAGTCATCTCTCTTCTCGGAATGCAGCCTTGCGAGGGGACCGAGGTTGTCTCGAGCAATGCG AGGTCGCACACATGTCTACTGTCCGGTGTGTTCATAGGAAACGTGAAGGTTCTTGCAAGGTTGCAGTTCGGAATGCACGGTCCCAAGGAAGTTGCGATGA AACTAGCTGTGAGATCCGAGGATATAGCCATCAGCGACGCTATCCACGAGATCATTTCGAGCGGCTAA
AA sequence Show only first row Show all	>Lus10023580 pacid=23160627 polypeptide=Lus10023580 locus=Lus10023580.g ID=Lus10023580.BGIv1.0 annot-version=v1.0 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNEPQLDPRRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLFQSKDVGLRRMLYLIIKELSPS SDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGVLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEVVKRWSNEVQEAVQSRAALVQFHALA LLHQVIRESASNLQTGDRPFYEFLEICLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMES LISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA KESGLFHLCEFIEDCEFTYLSTQVALILHFLGIEGPKTADPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAIADSLKPRIFVLLRRCLFDSDDEVRDRA TLYLNTLGGDGEVVETDKKVKEFLFGALDIPLVNLETSLINHEASEEPFDINSVPREVKSLPLAEKKAAGKRQPTGLGVLPPGPPSTLDAYERLISSIPE LASLGKLFKSSVPTELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVTVVVDTSEAEEFSFVLSKPLRSLPYDTPGQTFVVFEKPEGVPAEGK FSNTLRFIVKEVDPSTGEADEDGVDDEYQLEELEVVSADYMQKVGVANFRNAWESLDAELERVDEYGLGPRENLVEAVNAVISLLGMQPCEGTEVVSSNA RSHTCLLSGVFIGNVKVLARLQFGMHGPKEVAMKLAVRSEDIAISDAIHEIISSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	1.4	0.9617
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	2.4	0.9611
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	3.2	0.9298
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	3.5	0.9284
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	4.0	0.9376
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	4.2	0.9429
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10029325 [exp]	5.2	0.9175
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	5.3	0.9263
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	9.2	0.9150
AT3G17900			unknown protein		Lus10030797 [exp]	10.2	0.8798

Compare expression of checked genes

Lus10023580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.