Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34440 267 / 2e-85 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 263 / 2e-84 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT3G24550 249 / 1e-78 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 243 / 1e-77 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G18810 240 / 7e-75 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT3G24540 218 / 5e-68 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G49270 220 / 4e-67 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G70460 213 / 2e-64 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 209 / 4e-63 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G23540 207 / 3e-62 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040467 [exp] 424 / 1e-147 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 304 / 6e-100 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 297 / 2e-99 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10023645 [exp] 270 / 5e-86 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 268 / 8e-86 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 264 / 4e-85 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 257 / 9e-85 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 250 / 1e-79 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026027 [exp] 217 / 1e-67 AT2G18470 420 / 5e-141 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081300 [exp] 275 / 2e-88 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 266 / 1e-85 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.009G115200 [exp] 265 / 6e-85 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 264 / 3e-84 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 259 / 2e-82 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 238 / 5e-75 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 230 / 6e-72 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 221 / 3e-67 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 214 / 1e-64 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 207 / 2e-62 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023581 pacid=23160529 polypeptide=Lus10023581 locus=Lus10023581.g ID=Lus10023581.BGIv1.0 annot-version=v1.0 ATGGAGACAAAATCTATCCTGATTTACGAATATGGTACTTGGATTGTAACCTGCAACAGGTATAGCATTACTAAGGATAAGAAGTTGCTTGTCTACGAGT TTGTGCCTAATGGAACCCTCGAGTTTCACCTCCACGGAACGAACCGGCCAACGATGGACTGGCCGACCCGTCTCAAAATCGCCATTGGATCGGCGAAAGG ACTTGCCTACTTGCATGAAGACTGTAATTCACTATCTCAAACTCTGTATATGGCTCCAGAGTACGCATCAAGCGGGAAACTAACGGACAAATCCGACGTG TTCTCGTTCGGGGTCGTGTTGCTAGAGCTAATATCCGGTCGCCGTCCTCTCGATGATCATTCTACCATGGACTGCTTGGTGGATTGGGCGAGGCCTCTAT GTACAAAAGCATTGGAAAGCGGGAAATGCGACGCATTGGTGGATCCAGGATTGGAAAGGAACTATAACGCTCAGGAGATGAAACGAATGGTCGCTTGTGC TGCTAACGCTATCCGACATTCATCGAAAAAACGACCCAAGATGAGTCAGATTGTTCGAGTACTCGAGAGCGACACATCATTGGAGCAGTTGAACGACGGA GGAATCAAAGCAGGTCACAGTTCGTACTATGGCCACACATCTTCCGATGAATACGATCAGAGATCGTACAGTGCAGACATGAAGAAGTTTAGGAAGGCGA TAATGGATGACCTAAGCAGCGAGTATGGTGATACGAGATACTGA
AA sequence Show only first row Show all	>Lus10023581 pacid=23160529 polypeptide=Lus10023581 locus=Lus10023581.g ID=Lus10023581.BGIv1.0 annot-version=v1.0 METKSILIYEYGTWIVTCNRYSITKDKKLLVYEFVPNGTLEFHLHGTNRPTMDWPTRLKIAIGSAKGLAYLHEDCNSLSQTLYMAPEYASSGKLTDKSDV FSFGVVLLELISGRRPLDDHSTMDCLVDWARPLCTKALESGKCDALVDPGLERNYNAQEMKRMVACAANAIRHSSKKRPKMSQIVRVLESDTSLEQLNDG GIKAGHSSYYGHTSSDEYDQRSYSADMKKFRKAIMDDLSSEYGDTRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Lus10023581 [exp]	0	1
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	5.3	0.9520
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	7.7	0.9520
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	9.3	0.9506
					Lus10041434 [exp]	9.3	0.8689
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	10.4	0.9483
AT3G07750			3'-5'-exoribonuclease family p...		Lus10012336 [exp]	10.5	0.9183
AT2G33420			Protein of unknown function (D...		Lus10023742 [exp]	11.6	0.8439
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	12.8	0.9481
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	13.4	0.9449
AT3G52610			unknown protein		Lus10014215 [exp]	14.0	0.9430

Compare expression of checked genes

Lus10023581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.