Plant FIBer expression Database

Lus10023585 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10780 253 / 4e-87 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040473
[exp]
348 / 9e-125 AT5G10780 268 / 4e-93 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G266300
[exp]
318 / 7e-113 AT5G10780 269 / 2e-93 unknown protein
Potri.018G016800
[exp]
314 / 2e-111 AT5G10780 259 / 2e-89 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06417 DUF1077 Protein of unknown function (DUF1077)
Representative CDS sequence
>Lus10023585 pacid=23160538 polypeptide=Lus10023585 locus=Lus10023585.g ID=Lus10023585.BGIv1.0 annot-version=v1.0
ATGGGTTCGGGTCGCAGATGGGCTGTTGATTTCACTGACAATTCGCTAGCCCCTTCCTCCCGTGACATCCCTGATCCTCCCGGTTTCTCTCGTGCCTCCC
AAGATCAGGATGAATCTGCGGTATCGAAGCAAAAGAAGGACGCTGAAGCAAATTGGAAATCCCAGAAAGCATGGGAAGTAGCACAAGCACCTTTCAAGAA
TTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGGAATACAGTGCACCTTTTCAGCATTGGTATTACGTTTTCAGCTCTTTGGCAACCATTGAGCGCT
CTACAAGGGGTTGGAAAGGTCTTTGAGCCATACAAGGACAGCAAAGTTGACCTTCTTACACCTAAGTTACTATACATTGCCCTAAATCTAGGGGCCATGA
TCTTGGGGGTTTGGAAGCTTAACACATTGGGTCTACTTCCAACACAGGCATCAGACTGGGTTTCAACTCTACCACCTGCTCAGGAAGTTGAATTCTCAGG
TGGAGGGATTGCTTTGCATTGA
AA sequence
>Lus10023585 pacid=23160538 polypeptide=Lus10023585 locus=Lus10023585.g ID=Lus10023585.BGIv1.0 annot-version=v1.0
MGSGRRWAVDFTDNSLAPSSRDIPDPPGFSRASQDQDESAVSKQKKDAEANWKSQKAWEVAQAPFKNLLMMGFMMWMAGNTVHLFSIGITFSALWQPLSA
LQGVGKVFEPYKDSKVDLLTPKLLYIALNLGAMILGVWKLNTLGLLPTQASDWVSTLPPAQEVEFSGGGIALH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10780 unknown protein Lus10023585
[exp]
0 1
AT5G51740 Peptidase family M48 family pr... Lus10015019
[exp]
3.2 0.8063
AT5G11150 ATVAMP713 vesicle-associated membrane pr... Lus10001492
[exp]
5.1 0.8232
AT5G49060 Heat shock protein DnaJ, N-ter... Lus10006515
[exp]
7.5 0.8082
AT2G25310 Protein of unknown function (D... Lus10001955
[exp]
9.6 0.8245
AT5G51880 2-oxoglutarate (2OG) and Fe(II... Lus10038893
[exp]
10.4 0.8216
AT2G30330 BLOS1 BLOC subunit 1, GCN5L1 family ... Lus10030147
[exp]
22.8 0.7847
AT4G28440 Nucleic acid-binding, OB-fold-... Lus10013989
[exp]
23.1 0.7901
AT3G32930 unknown protein Lus10039189
[exp]
23.5 0.7835
AT5G07840 PIA1 phytochrome interacting ankyri... Lus10033816
[exp]
25.0 0.8060
AT3G15260 Protein phosphatase 2C family ... Lus10009210
[exp]
27.4 0.8017

Lus10023585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.